PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005313m
Common NameEUTSA_v10005313mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 332aa    MW: 38519.6 Da    PI: 9.5059
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005313mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.9e-25453251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ++++ks +  +f++R+++i+KKA+ELS+LC++ev+vi+++++g+l+++++
  Thhalv10005313m  4 SSSSKSLAASSFANRLKTIFKKAYELSILCQIEVCVIYYGPNGELKTWPK 53
                     799*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-4154IPR002100Transcription factor, MADS-box
PfamPF003194.1E-151251IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-151382IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.91455IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRASSSSKSL AASSFANRLK TIFKKAYELS ILCQIEVCVI YYGPNGELKT WPKEKEKVKA  60
MAFRYKAVTK RKKSLNLQEF MEGKKENDEK NSKKKKTKRD SESVNGSKYP DWYPIFDHYS  120
PNQLSRLILS LEQTLSKLQE RLRFVEAQKQ RNTNLVYQTW TPSSSLNQYH HHHQYQRQPL  180
NPNQFSLYMY NHGDATLSQL PLSASSANQL INYQNHLMMQ QQKLHGFDQN YIKNGNFQHS  240
NTTQALLSVQ EPHELMQQQE LYGSHHQNMC MMMNDVSNSN VVQDPCLSRR VPDELVSDFQ  300
KKHYGDMVGS TSFCPELLSG FFCQKTADMR D*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005313m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394046.10.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL08e-62AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLV4KN160.0V4KN16_EUTSA; Uncharacterized protein
STRINGXP_006394046.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.14e-99AGAMOUS-like 78
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]