PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005251m
Common NameEUTSA_v10005251mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 61aa    MW: 6828.9 Da    PI: 7.355
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005251mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind31.16e-101253243
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH CS
     HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk 43
                     F k ly  ++d+++++++sws++++sf+++d+  f++++L++
  Thhalv10005251m 12 FYKALYMFVDDPSMDSIVSWSKSNRSFIIWDPVGFHTRILSR 53
                     8999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.8E-10953IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.0E-111055IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-71253IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MAGLSDRALS PFYKALYMFV DDPSMDSIVS WSKSNRSFII WDPVGFHTRI LSRSIGICEI  60
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005251m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487557.15e-15PREDICTED: heat stress transcription factor A-4a-like
TrEMBLV4KNS56e-36V4KNS5_EUTSA; Uncharacterized protein
STRINGXP_006394301.11e-36(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1817268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.14e-12heat shock transcription factor A6B