PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005197m
Common NameEUTSA_v10005197mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 93aa    MW: 10640 Da    PI: 8.5246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005197mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.9e-0822591854
                     HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     +  ++Lr+llP+ + + +s K+s + +L+++++YI++L
  Thhalv10005197m 22 DLVSKLRQLLPEiRERRRSDKVSASKVLQETCNYIRKL 59
                     66689*******999*********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.302459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-71975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-52259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-82277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSRQSS SALRISDDQM IDLVSKLRQL LPEIRERRRS DKVSASKVLQ ETCNYIRKLH  60
SEVDNLSDRL SQLLDSVDED SHEAAVIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005197m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246401e-100BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395335.15e-57transcription factor PRE5
SwissprotQ9LJX11e-52PRE5_ARATH; Transcription factor PRE5
TrEMBLV4MMB31e-55V4MMB3_EUTSA; Uncharacterized protein
STRINGXP_006395335.12e-56(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-55bHLH family protein