PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004895m | ||||||||
Common Name | EUTSA_v10004811mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 23752.4 Da PI: 6.7677 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 35.8 | 2.3e-11 | 24 | 70 | 51 | 97 |
DUF260 51 eeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + r+ + sl+yeA+ r+ +Pv+Ga+g++++++++++q+++e++l+ Thhalv10004895m 24 QPYRNLNVPSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLR 70 556888899********************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 7.9E-7 | 25 | 68 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MLKDTPPSSS LNSSVAPASC PLSQPYRNLN VPSLLYEACG RTVNPVNGAI GMLWTGNWNI 60 CQAAVETVLR GGSLRPIPEL LTHGGGFAGF PSATSEEASE ICTEMLNLQQ NNSSDRNVYH 120 HSRFSSSRSR STMDSSPTKR KRLASEQQLS SELDLSLIPN FPIKTTPSST RRRVESPSMN 180 SEESVTTTTT TSFWDNTATA TDDLYGKGGE TSKLLNLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004895m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393945.1 | 1e-134 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 9e-92 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | V4K073 | 1e-159 | V4K073_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393945.1 | 1e-134 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 5e-80 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004895m |
Entrez Gene | 18011981 |
Publications ? help Back to Top | |||
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