PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004868m
Common NameEUTSA_v10004868mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 230aa    MW: 25796.9 Da    PI: 5.1968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004868mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.1e-141565148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +lvd  k  G+g   +W+ +++  g++R++k+c++rw +yl
  Thhalv10004868m 15 KGPWSAEEDGKLVDFLKTRGSGggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65
                     79***********************************************97 PP

2Myb_DNA-binding51.32.7e-1672115247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g + +eE +l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Thhalv10004868m  72 GLFLEEEIQLVIDLHARLGNR-WSKIAAELP-GRTDNDIKNYWNTH 115
                      66779****************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-18666IPR009057Homeodomain-like
PROSITE profilePS5129411.7721065IPR017930Myb domain
SuperFamilySSF466898.99E-2512112IPR009057Homeodomain-like
SMARTSM007175.9E-71467IPR001005SANT/Myb domain
PfamPF002492.1E-121565IPR001005SANT/Myb domain
CDDcd001673.49E-51765No hitNo description
PROSITE profilePS5129426.02566120IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2567121IPR009057Homeodomain-like
SMARTSM007171.1E-1570118IPR001005SANT/Myb domain
PfamPF002497.6E-1571115IPR001005SANT/Myb domain
CDDcd001673.25E-1176116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVGRKPCCDE VGLRKGPWSA EEDGKLVDFL KTRGSGGGWC WRDVPKLAGL RRCGKSCRLR  60
WTNYLRPDLK RGLFLEEEIQ LVIDLHARLG NRWSKIAAEL PGRTDNDIKN YWNTHIKRKL  120
IRMGIDPNTH RRFDQQKVNH EEEKDDVPVV LQNDTSAPLS GNLNQLSDVD GDDQPWSFLM  180
ENDDGGGGGG ELTMLLSGNI TSSSSSSSSL WLKYGDLGYE DLELACFED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27131205108B-MYB
1h8a_C9e-271312025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00577DAPTransfer from AT5G62320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004868m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1990261e-159AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBankAK1756871e-159AK175687.1 Arabidopsis thaliana mRNA for MYB99, complete cds, clone: RAFL22-21-A14.
GenBankAY5196441e-159AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.
GenBankDQ4471051e-159DQ447105.1 Arabidopsis thaliana clone pENTR221-At5g62320 myb family transcription factor (At5g62320) mRNA, complete cds.
GenBankDQ6533901e-159DQ653390.1 Arabidopsis thaliana clone 0000017240_0000012066 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394409.11e-168transcription factor MYB20
SwissprotQ9C7U74e-67MYB20_ARATH; Transcription factor MYB20
TrEMBLV4K1C31e-166V4K1C3_EUTSA; Uncharacterized protein
STRINGXP_006394409.11e-167(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-128myb domain protein 99
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]