PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004868m | ||||||||
Common Name | EUTSA_v10004868mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 25796.9 Da PI: 5.1968 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.1e-14 | 15 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +lvd k G+g +W+ +++ g++R++k+c++rw +yl Thhalv10004868m 15 KGPWSAEEDGKLVDFLKTRGSGggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65 79***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 72 | 115 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g + +eE +l +d++++lG++ W++Ia++++ gRt++++k++w+++ Thhalv10004868m 72 GLFLEEEIQLVIDLHARLGNR-WSKIAAELP-GRTDNDIKNYWNTH 115 66779****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 6 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.772 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-25 | 12 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-7 | 14 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.49E-5 | 17 | 65 | No hit | No description |
PROSITE profile | PS51294 | 26.025 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 67 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-15 | 71 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.25E-11 | 76 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVGRKPCCDE VGLRKGPWSA EEDGKLVDFL KTRGSGGGWC WRDVPKLAGL RRCGKSCRLR 60 WTNYLRPDLK RGLFLEEEIQ LVIDLHARLG NRWSKIAAEL PGRTDNDIKN YWNTHIKRKL 120 IRMGIDPNTH RRFDQQKVNH EEEKDDVPVV LQNDTSAPLS GNLNQLSDVD GDDQPWSFLM 180 ENDDGGGGGG ELTMLLSGNI TSSSSSSSSL WLKYGDLGYE DLELACFED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 13 | 120 | 5 | 108 | B-MYB |
1h8a_C | 9e-27 | 13 | 120 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00577 | DAP | Transfer from AT5G62320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004868m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF199026 | 1e-159 | AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds. | |||
GenBank | AK175687 | 1e-159 | AK175687.1 Arabidopsis thaliana mRNA for MYB99, complete cds, clone: RAFL22-21-A14. | |||
GenBank | AY519644 | 1e-159 | AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds. | |||
GenBank | DQ447105 | 1e-159 | DQ447105.1 Arabidopsis thaliana clone pENTR221-At5g62320 myb family transcription factor (At5g62320) mRNA, complete cds. | |||
GenBank | DQ653390 | 1e-159 | DQ653390.1 Arabidopsis thaliana clone 0000017240_0000012066 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394409.1 | 1e-168 | transcription factor MYB20 | ||||
Swissprot | Q9C7U7 | 4e-67 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | V4K1C3 | 1e-166 | V4K1C3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394409.1 | 1e-167 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62320.1 | 1e-128 | myb domain protein 99 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004868m |
Entrez Gene | 18012639 |
Publications ? help Back to Top | |||
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