PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004796m | ||||||||
Common Name | EUTSA_v10004796mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 27303.5 Da PI: 10.1512 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.5 | 4.7e-38 | 33 | 217 | 3 | 118 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s +s+ +s+ Thhalv10004796m 33 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGNSTTNSTsstctlss 126 79*************************************************************9999988833333333332222235666666 PP TCP 89 ............................................................kaaksaa.kskksqksaasalnlakesraka 118 a ++ +++++q+++ +al ++++++++a Thhalv10004796m 127 slldhkpllgsspfilgkrvradedtgggkdetmgsfatpagfwavparpdfgqvwsfatGAPQEMFlQQHQQQQQPGAALFVHQQQQQQA 217 7777777777777777777777777777777777777777777777777777777777763333333344444444554555555444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.2E-34 | 38 | 195 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.892 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSNNTEGVMI SNGAAIQRQQ QQQQQSSDGA LVVKKPPAKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTASVSIR GNSTTNSTSS 120 TCTLSSSLLD HKPLLGSSPF ILGKRVRADE DTGGGKDETM GSFATPAGFW AVPARPDFGQ 180 VWSFATGAPQ EMFLQQHQQQ QQPGAALFVH QQQQQQAAMG EASAARVGNY LPGHLNLLAS 240 LSGGPPGSGR REDDPR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004796m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189332 | 1e-66 | AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024007014.1 | 0.0 | transcription factor TCP7 | ||||
Refseq | XP_024007015.1 | 0.0 | transcription factor TCP7 | ||||
Refseq | XP_024007016.1 | 0.0 | transcription factor TCP7 | ||||
Refseq | XP_024007017.1 | 0.0 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-119 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | V4KPJ1 | 0.0 | V4KPJ1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394596.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-77 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004796m |
Entrez Gene | 18012777 |