PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004763m | ||||||||
Common Name | EUTSA_v10004763mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | Whirly | ||||||||
Protein Properties | Length: 274aa MW: 30404.4 Da PI: 9.8947 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 212.9 | 3.2e-66 | 95 | 234 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpa.akgsneGkvrka 93 s+yk+kaal++++++p+f+al+sg++kl+++G+lll++a+a+++r+ydW++kq+f+ls+ e+++lv+l+++esceffhdp kgs+eGkvrk+ Thhalv10004763m 95 SIYKGKAALTIEPRAPEFVALESGAFKLSKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVPEIGNLVSLGPRESCEFFHDPNkGKGSDEGKVRKV 188 7********************************************************************************45679******** PP Whirly 94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 lkvePlpdGsG f+nlsv+n+l++++es+++P++kaefavl+s+++ Thhalv10004763m 189 LKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFN 234 *******************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.4E-77 | 83 | 256 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.12E-79 | 87 | 273 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.4E-57 | 96 | 231 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MTQQYLQLLS SPPMAANSKI FINHRFTDSR FLTAGSFSGK RDGFAVKPTA RVKLSVKSRQ 60 EDYFEKQRFG DSSSSPPYSP QNAEGSSPRY YVGHSIYKGK AALTIEPRAP EFVALESGAF 120 KLSKEGFLLL QFAPAAGVRQ YDWSRKQVFS LSVPEIGNLV SLGPRESCEF FHDPNKGKGS 180 DEGKVRKVLK VEPLPDGSGR FFNLSVQNKL LNVDESVYIP ITKAEFAVLI SAFNFILPHL 240 IGWQAFANSI KPEDSNRLSN ASPKYGGDYE WSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koq_A | 1e-113 | 83 | 251 | 2 | 169 | Single-stranded DNA-binding protein WHY3, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004763m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT015336 | 0.0 | BT015336.1 Arabidopsis thaliana At2g02740 gene, complete cds. | |||
GenBank | BT015641 | 0.0 | BT015641.1 Arabidopsis thaliana At2g02740 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395762.1 | 0.0 | single-stranded DNA-binding protein WHY3, chloroplastic | ||||
Swissprot | Q66GR6 | 1e-168 | WHY3_ARATH; Single-stranded DNA-binding protein WHY3, chloroplastic | ||||
TrEMBL | V4L025 | 0.0 | V4L025_EUTSA; Uncharacterized protein | ||||
STRING | XP_006395762.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5023 | 27 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.1 | 1e-170 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004763m |
Entrez Gene | 18011931 |
Publications ? help Back to Top | |||
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