PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004691m
Common NameEUTSA_v10004691mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 297aa    MW: 32584.1 Da    PI: 10.5215
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004691mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +        k R+  ++k++w++
  Thhalv10004691m  5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDPEfslvlKSRSNVDLKDKWRN 55
                     79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.362161IPR017930Myb domain
SuperFamilySSF466899.72E-16261IPR009057Homeodomain-like
SMARTSM007177.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-14556IPR009057Homeodomain-like
PfamPF002491.1E-8555IPR001005SANT/Myb domain
CDDcd116601.20E-17656No hitNo description
SuperFamilySSF467852.56E-15119192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.3E-13120185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-12120186IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.416122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.1E-9125183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV LKHGTGKWRT ILSDPEFSLV LKSRSNVDLK DKWRNISVTA  60
LWGSRKKAKL ALKRTQPAPK QDDNNTATLS ILPLANDEER ANPTSPGGSG GGSPRTCASK  120
RSITSLDKII LEAITNLKEP RGSDRTSIFL YIEENFKTPP NMKRHVAVRL KHLSSNGPLV  180
KIKHKYRFST NFNSLGARQK SHQLFVEGNN KKDAPKPEEN GNKSRAEGEL FMIKGMTAAE  240
AAEAAARAVA EAEFAITEAE EASKEAERAE AEAEAAQIFA KAAMKALKFK IRNHTW*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00597DAPTransfer from AT5G67580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004691m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0398830.0AY039883.1 Arabidopsis thaliana AT5g67580/K9I9_15 mRNA, complete cds.
GenBankAY0776680.0AY077668.1 Arabidopsis thaliana AT5g67580/K9I9_15 mRNA, complete cds.
GenBankAY5195450.0AY519545.1 Arabidopsis thaliana MYB transcription factor (At5g67580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393965.10.0telomere repeat-binding factor 2
SwissprotQ9FJW51e-147TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLV4MIR20.0V4MIR2_EUTSA; Uncharacterized protein
STRINGXP_006393965.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.21e-135MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]