PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004690m
Common NameEUTSA_v10004690mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 297aa    MW: 33034.9 Da    PI: 7.5999
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004690mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.7e-35251152101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++ed++++++isw+e+g+sf+v+++++fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++ +k+ll+
  Thhalv10004690m  25 FLNKTFNLVEDPSIDDVISWNEDGSSFIVWNPTDFARDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFRRREKRLLR 109
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Thhalv10004690m 110 EIQRRK 115
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-5321114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.5E-3722114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.43E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MISPPSYNGD AMVNGESQRS VPTPFLNKTF NLVEDPSIDD VISWNEDGSS FIVWNPTDFA  60
RDLLPKHFKH NNFSSFVRQL NTYGFKKVVP DRWEFSNDFF RRREKRLLRE IQRRKLTHVA  120
APPSEVVAVA AQRIQTAKPG VSPSNSGEDQ AVSPSSWFCQ TGNGGLSVEL LEENEKLRSQ  180
NIQLNRELTQ MKSLCDNIFS LMSNYAGSLP DRSYSSGGSS SHEAMKPVEF LPAKTVVGEE  240
ESPRLFGVPI GLKRTRSEGV QVKTVTVAGG GSDGGGENED TPWLRHYNRA NQRVCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-222511429129Heat shock factor protein 1
5d5v_B5e-222511429129Heat shock factor protein 1
5d5v_D5e-222511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004690m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394443.10.0heat stress transcription factor B-2a
SwissprotQ9SCW41e-149HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLV4KKK10.0V4KKK1_EUTSA; Uncharacterized protein
STRINGXP_006394443.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-127heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]