PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004682m | ||||||||
Common Name | EUTSA_v10004682mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | Dof | ||||||||
Protein Properties | Length: 301aa MW: 31854.8 Da PI: 6.9266 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.6 | 1.3e-38 | 47 | 107 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Thhalv10004682m 47 HHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 107 57899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-34 | 38 | 103 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.5E-33 | 49 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.534 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 53 | 89 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MQDIHDYSMT GGVGGGGSTG RFFGGGISGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN 60 TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC RKAKRSKSKQ HPSSPSPPSD 120 EKPTTQDVEE KSSSSESSSL TASNSNVAAV AATAAATAAA VKAASSGFTG TDMPNLKLYG 180 NGIEWSTLIG QGSSDGGVFS EIGGFTAAPS IETTPFGFGG NSVNQQCIAD HLKLEGDTVQ 240 QQFGDRTDQV DPNMGFEPLD WGSGGGDQTL FDLTSTVDHA YWSQSQWTSS DQDQNGLYLP 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004682m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353138 | 0.0 | AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394560.1 | 0.0 | dof zinc finger protein DOF5.4 | ||||
Swissprot | Q8LDR0 | 1e-141 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | E4MX91 | 0.0 | E4MX91_EUTHA; mRNA, clone: RTFL01-17-G03 | ||||
TrEMBL | V4MKA0 | 0.0 | V4MKA0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394560.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-114 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004682m |
Entrez Gene | 18013245 |
Publications ? help Back to Top | |||
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