PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004648m
Common NameEUTSA_v10004648mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 310aa    MW: 35484.9 Da    PI: 9.729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004648mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.6e-1665110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
  Thhalv10004648m  65 RGHWRFSEDSQLMELVAVYGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 110
                      799*****************************.***********996 PP
2Myb_DNA-binding48.52e-15118161247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
  Thhalv10004648m 118 RAFSIEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 161
                      57999****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.99260111IPR017930Myb domain
SMARTSM007176.5E-1364113IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2765162IPR009057Homeodomain-like
PfamPF002492.8E-1565110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2466118IPR009057Homeodomain-like
CDDcd001671.32E-1168109No hitNo description
PROSITE profilePS5129425.168112166IPR017930Myb domain
SMARTSM007171.2E-11116164IPR001005SANT/Myb domain
PfamPF002497.1E-12118161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-19119166IPR009057Homeodomain-like
CDDcd001671.37E-8119162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDFSCFQEYP FDLHRRGAFN GFGENHAVSA TVEDLSNKKG MQKERDDVKK KKKKKKQRGS  60
RVCSRGHWRF SEDSQLMELV AVYGPQNWNH IAEKMQGRTG KSCRLRWFNQ LDPRINKRAF  120
SIEEEERLLA AHRAFGNKWA MIAKLFNGRT DNALKNHWHV LMARKLRHQS TSYIRRFNGS  180
AHKPTADHDK SFNLSPDTVD DEDMNLENYS WKMLKEGTTN LKAQYLQEEY CSSRMPMQGP  240
HHHYSTFPAD SLALTLHVSI QEPSSSSSSS SLSLPSSSAE HTMVTGYFES IKPPAFIDFL  300
GVGHQSPNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-30651664105MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-30651664105C-Myb DNA-Binding Domain
1msf_C9e-30651664105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14251KERDDVKKKK
24955KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004648m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395314.10.0transcription factor MYB117
TrEMBLV4K4Z80.0V4K4Z8_EUTSA; Uncharacterized protein
STRINGXP_006395314.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-165myb domain protein 110