PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004620m
Common NameEUTSA_v10004620mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 318aa    MW: 35926.3 Da    PI: 5.9968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004620mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+++++++G  +W++ ++  g++R++k+c++rw +yl
  Thhalv10004620m 14 KGPWLPEEDDKLINYIQKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.11.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+  ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
  Thhalv10004620m  67 RGKFSPEEQHTILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-24664IPR009057Homeodomain-like
PROSITE profilePS5129415.568961IPR017930Myb domain
SuperFamilySSF466893.44E-3011108IPR009057Homeodomain-like
SMARTSM007176.6E-141363IPR001005SANT/Myb domain
PfamPF002496.3E-161461IPR001005SANT/Myb domain
CDDcd001674.03E-111661No hitNo description
PROSITE profilePS5129426.10962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2765117IPR009057Homeodomain-like
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PfamPF002495.7E-1567112IPR001005SANT/Myb domain
CDDcd001676.99E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRSPSSDET GLKKGPWLPE EDDKLINYIQ KHGHSSWSAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEQHTILN LHAVLGNKWS MIASHLPGRT DNEIKNFWNT HLKKKMIQMG  120
YDPMTHRPRT DDIFSSLSQL MSLSNLRGLV DLQQQVPTED QAFLDLQAEM AKLQLFQYFL  180
QPPPLPISTS SSSINPNDLN ILNLLFKENS NTNNNLDFGL LTSYLQDFNN LNLPSHKSLD  240
ENHFIQNISP IWLHEPPSLS QTMLPSHESD DLAGSVDGFG CNQASSNHDH ELAATGSVDW  300
PDHLFDDSIF PDIPYQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004620m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394061.10.0transcription factor MYB53
SwissprotQ9FJP21e-170MYB53_ARATH; Transcription factor MYB53
TrEMBLV4KN310.0V4KN31_EUTSA; Uncharacterized protein
STRINGXP_006394061.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-159myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]