PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004588m
Common NameEUTSA_v10004588mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 326aa    MW: 37031.2 Da    PI: 6.3669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004588mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-172774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W  eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Thhalv10004588m 27 RGPWIVEEDIKLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 74
                     89********************************************97 PP
2Myb_DNA-binding50.54.9e-1680123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Thhalv10004588m  80 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 123
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7392274IPR017930Myb domain
SuperFamilySSF466899.77E-3024121IPR009057Homeodomain-like
SMARTSM007171.6E-132676IPR001005SANT/Myb domain
PfamPF002496.2E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-222881IPR009057Homeodomain-like
CDDcd001678.88E-112974No hitNo description
PROSITE profilePS5129422.91775129IPR017930Myb domain
SMARTSM007172.9E-1479127IPR001005SANT/Myb domain
PfamPF002498.1E-1580123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2282128IPR009057Homeodomain-like
CDDcd001675.17E-7100123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDDQRSLKIN KNMEDFESNI EDMDLRRGPW IVEEDIKLIN YIATHGEGRW NSLARCAGLK  60
RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHSRWGN RWSKIAQYLP GRTDNEIKNY  120
WRTRVQKHAK QLRCNVNSQQ FKDTMRYLWM PRLVERIQAA SGSTSTTTTG SAATSSCVTT  180
SSDQFMMTSY DDGVNNNTNM DHLGLMSNPN VYVTPGNSSV AVSPESDLAE YHVAPSEVGK  240
IENSYNADQN LVGPRMSSSQ INYLDNNNNG LLSGDSRAMQ EQSYVNWFEN ISGAIPSFSD  300
SFLNIGSDQN FWLLQQQQIL NNGSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252412124120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004588m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395046.10.0transcription factor MYB78 isoform X2
SwissprotQ9FGY31e-151MYB78_ARATH; Transcription factor MYB78
TrEMBLV4KQR20.0V4KQR2_EUTSA; Uncharacterized protein
STRINGXP_006395046.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-133myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]