PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004566m | ||||||||
Common Name | EUTSA_v10004566mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GATA | ||||||||
Protein Properties | Length: 333aa MW: 36301.3 Da PI: 6.5827 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.5 | 7.7e-18 | 244 | 278 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg kTp+WR gp g ktLCnaCG++y++ +l Thhalv10004566m 244 CSHCGIQKTPQWRAGPMGAKTLCNACGVRYKSGRL 278 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.0E-100 | 25 | 332 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 3.5E-16 | 238 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.517 | 238 | 274 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.8E-14 | 241 | 301 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.3E-15 | 242 | 276 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.72E-14 | 243 | 291 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 244 | 269 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.0E-15 | 244 | 278 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MERVEAALKS SIRKEMALKT TTPVYDECMA MTTVQTGFPA DDFSVDDLLD LSNDDVFADD 60 DVEPKAQQEE MLRVSSSEEP HDHGDASHRD FGSLPLSELS VPADELANLE WLSHFVDDSF 120 MEYSAPNLTG TSTKPAWLTG DRKHPVTPAT EESCFNSPVP AKARSKRNRN GGKVWSLGSS 180 SSSGPSSSSS TSSSSSSGPS SPWFSGAELP EPFATSEKPP VPKKHKKRSA ESVYSGQPLQ 240 QRRCSHCGIQ KTPQWRAGPM GAKTLCNACG VRYKSGRLLP EYRPACSPTF SSELHSNHHR 300 KVMEMRRKKE PTDDNATGLN QLVHSPQAVP SF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004566m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ226510 | 0.0 | DQ226510.1 Thellungiella halophila clone ThBAC2 hypothetical protein genes, complete cds; transposon En/Spm, complete sequence; transposon Gypsy, complete sequence; and transposon AC-like element, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393827.1 | 0.0 | GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 1e-166 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | Q0ZR57 | 0.0 | Q0ZR57_EUTHA; GATA transcription factor | ||||
TrEMBL | V4KUR4 | 0.0 | V4KUR4_EUTSA; GATA transcription factor | ||||
STRING | XP_006393827.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3698 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-159 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004566m |
Entrez Gene | 18012601 |