PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004550m
Common NameEUTSA_v10004550mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 337aa    MW: 38237.3 Da    PI: 7.9003
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004550mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.41.1e-56161421129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++
  Thhalv10004550m  16 LPPGFRFHPTDEELITHYLHKKVLDVTFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCLRDRKYPTGLRTNRATEAGYWKATGKDKEIYR 108
                      79**************************99.89***************8888899*************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +++lvg+kktLvfy+grapkg+kt+Wvmheyrle
  Thhalv10004550m 109 -GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142
                      .999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-6412166IPR003441NAC domain
PROSITE profilePS5100560.07116166IPR003441NAC domain
PfamPF023651.6E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD VTFSAKAIGE VDLNKSEPWE  60
LPWMAKMGEK EWYFFCLRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYRGRAPKGQ KTNWVMHEYR LEGKLSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR  180
IGSLGTDFSP SLLPSLTDSS PYNNKTKTEP VYVPCFSNQT DQTQGTILNC FSSSILNPIQ  240
TDIFHRIPLY QTQSLQVSGN LQSPILAQEH SVLQTMIDNN RGQSLKTMSV SQETAVSTDM  300
NTDISSDFEF GKRQFDAQED PSSSAGPVDL EPFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-551317214171NO APICAL MERISTEM PROTEIN
1ut4_B4e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_A4e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_B4e-551317214171NO APICAL MERISTEM PROTEIN
3swm_A4e-551317217174NAC domain-containing protein 19
3swm_B4e-551317217174NAC domain-containing protein 19
3swm_C4e-551317217174NAC domain-containing protein 19
3swm_D4e-551317217174NAC domain-containing protein 19
3swp_A4e-551317217174NAC domain-containing protein 19
3swp_B4e-551317217174NAC domain-containing protein 19
3swp_C4e-551317217174NAC domain-containing protein 19
3swp_D4e-551317217174NAC domain-containing protein 19
4dul_A4e-551317214171NAC domain-containing protein 19
4dul_B4e-551317214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004550m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0546440.0AY054644.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds.
GenBankAY0814960.0AY081496.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds.
GenBankAY0851020.0AY085102.1 Arabidopsis thaliana clone 12970 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394506.10.0NAC domain-containing protein 100
SwissprotQ9FLJ20.0NC100_ARATH; NAC domain-containing protein 100
TrEMBLV4KPA80.0V4KPA8_EUTSA; Uncharacterized protein
STRINGXP_006394506.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.10.0NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]