PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004535m
Common NameEUTSA_v10004535mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 339aa    MW: 37758 Da    PI: 7.3439
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004535mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.74.2e-4371061100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv kll++l  ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql++++
  Thhalv10004535m   7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFAYVHKVFGASNVAKLLNELAANHREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQLQHDI 100
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      + +k+e
  Thhalv10004535m 101 ENAKKE 106
                      999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.0E-974332IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089126.3896107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-427104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAYVH KVFGASNVAK LLNELAANHR  60
EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQLQHDI ENAKKELAAY VGPQAMLPIL  120
QPHQAQPHFM SLPPQPQRPS SSSSASVLTQ QHHHNMLPMM AIPTGQLYHH QQQQQQQQIF  180
EAQQLAAVAR EQHNEMFRAY GGGGASSTSP HHHQNQPQVE ILRFDNNGFD SVPTGSVTVT  240
GFNQLSSGGT TVTGMSPSLA LGGNFVDSPP TNDNYHADQQ LHQHHHHHHQ QQQHQHHEAQ  300
LFIPTQSSQP LPPQTQETHT QPNSETEEGR RNIIRSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4731107114LOB family transfactor Ramosa2.1
5ly0_B3e-4731107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004535m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393884.10.0LOB domain-containing protein 36
RefseqXP_024007088.10.0LOB domain-containing protein 36
SwissprotQ9FKZ31e-163LBD36_ARATH; LOB domain-containing protein 36
TrEMBLV4K0190.0V4K019_EUTSA; Uncharacterized protein
STRINGXP_006393884.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80082441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-141ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]