PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004440m | ||||||||
Common Name | EUTSA_v10004440mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 368aa MW: 41100.6 Da PI: 6.9072 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.8 | 8.3e-30 | 64 | 177 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ + Thhalv10004440m 64 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgigesssstafpg 157 78*************************************************************6666666555555555555554444444444 PP TCP 66 ...................s 66 + Thhalv10004440m 158 tnlgfldswdlggsssrtrP 177 44444444444433333220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-27 | 65 | 201 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.789 | 65 | 123 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MRSRECDEED IQAKQEEDNH QVNLNNMLQQ QHQQQNQPSS VSSSRQWTSA FRNPRIVRVS 60 RTFGGKDRHS KVCTVRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVID WLLEAAKDDV 120 DKLPPLQFPH GFNQMYPNLI FGNSGIGESS SSTAFPGTNL GFLDSWDLGG SSSRTRPRIA 180 DTTTTQRESF DLDKGKWIKH DDHNSNQDHG FDTNHQHFSL TNPYNNNNNN NTSSYYNLGH 240 LQHSLDQSGN NVTVAISNVH NNNNLNLPPP SSSAGDGSQL FFGPTPPAMS SLFPTYPSFL 300 GASHHHHHHH HHVVDGAGNL QLFSSNANTA SQQQMMTGNS SLIRPFHHLM SSNHDTDRHS 360 SDNDSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 70 | 124 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 70 | 124 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004440m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394548.1 | 0.0 | transcription factor TCP5 | ||||
Swissprot | Q9FME3 | 0.0 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | V4KKT3 | 0.0 | V4KKT3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394548.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-174 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004440m |
Entrez Gene | 18012363 |
Publications ? help Back to Top | |||
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