PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004423m | ||||||||
Common Name | EUTSA_v10004423mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | CO-like | ||||||||
Protein Properties | Length: 374aa MW: 40908.4 Da PI: 5.8963 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.2 | 2.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ Thhalv10004423m 4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777776 PP | |||||||
2 | zf-B_box | 28 | 4.7e-09 | 46 | 87 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41 +C++++ ++++ C+d ++ lC++C ++H+g H++++ Thhalv10004423m 46 LICERCNAQPASVRCTDERVSLCQNCDWSGHNGnsshHKRQT 87 68*****************************98999888776 PP | |||||||
3 | CCT | 59.5 | 1.2e-20 | 316 | 359 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ Thhalv10004423m 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 359 99***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.31E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 8.2E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.542 | 43 | 88 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-5 | 46 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.21E-7 | 47 | 88 | No hit | No description |
SMART | SM00336 | 0.35 | 48 | 88 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.1 | 316 | 358 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.4E-15 | 316 | 358 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC 60 TDERVSLCQN CDWSGHNGNS SHHKRQTINC YSGCPSSDQL ASIWSFCLDL DFSSARQSAC 120 EQEMGLMTID EAGPGEKSGV ENIDVDQPGT SSAAQGMDRS SVPENSPLAK ELGVSEDDFC 180 GNLIMDEVDL AFEKYEELFG TAYNSSKDLF EHGGIGSLFE KHEGSIQGNA MQQPAGSNAA 240 SGDGDSFMSC RTEPIICYSS KPAHSNISFS GVTGESNAGD FQDCGASSMQ QLAKEPPPWC 300 PPTSQEIKAS SQATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE 360 AYDYDPLGPA RSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004423m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395204.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10 | ||||
Swissprot | Q9LUA9 | 0.0 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | V4MM15 | 0.0 | V4MM15_EUTSA; Uncharacterized protein | ||||
STRING | XP_006395204.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004423m |
Entrez Gene | 18012184 |
Publications ? help Back to Top | |||
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