PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004422m
Common NameEUTSA_v10004423mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 374aa    MW: 40908.4 Da    PI: 5.8963
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004422mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     +C+ ++e++   +C+++  +lC +C  + H+       H++
  Thhalv10004422m  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                     6*****************************65677777776 PP
2zf-B_box284.7e-094687441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                      +C++++ ++++  C+d ++ lC++C  ++H+g    H++++
  Thhalv10004422m 46 LICERCNAQPASVRCTDERVSLCQNCDWSGHNGnsshHKRQT 87
                     68*****************************98999888776 PP
3CCT59.51.2e-20316359144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  Thhalv10004422m 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 359
                      99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000211.31E-7447No hitNo description
SMARTSM003368.2E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.5424388IPR000315B-box-type zinc finger
PfamPF006431.7E-54687IPR000315B-box-type zinc finger
CDDcd000216.21E-74788No hitNo description
SMARTSM003360.354888IPR000315B-box-type zinc finger
PROSITE profilePS5101715.1316358IPR010402CCT domain
PfamPF062032.4E-15316358IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
TDERVSLCQN CDWSGHNGNS SHHKRQTINC YSGCPSSDQL ASIWSFCLDL DFSSARQSAC  120
EQEMGLMTID EAGPGEKSGV ENIDVDQPGT SSAAQGMDRS SVPENSPLAK ELGVSEDDFC  180
GNLIMDEVDL AFEKYEELFG TAYNSSKDLF EHGGIGSLFE KHEGSIQGNA MQQPAGSNAA  240
SGDGDSFMSC RTEPIICYSS KPAHSNISFS GVTGESNAGD FQDCGASSMQ QLAKEPPPWC  300
PPTSQEIKAS SQATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE  360
AYDYDPLGPA RSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004422m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395204.10.0zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLV4MM150.0V4MM15_EUTSA; Uncharacterized protein
STRINGXP_006395204.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]