PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004359m
Common NameEUTSA_v10004359mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 397aa    MW: 45654.2 Da    PI: 6.451
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004359mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.18.7e-2772155286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W ++e++ Li +rrem+  ++++k++k+lWe++s kmre+gf rsp +C++kw+n+ k++kk k+++k++    s +++y++++e
  Thhalv10004359m  72 WVQDETRILIILRREMDGLFNTSKSNKHLWEQISTKMREKGFDRSPAMCTDKWRNILKEFKKAKHQDKGNG-SGSAKMSYYNEIE 155
                      ********************************************************************975.55569*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-463133IPR009057Homeodomain-like
PROSITE profilePS500908.35164128IPR017877Myb-like domain
SMARTSM007170.00168130IPR001005SANT/Myb domain
CDDcd122036.14E-2870135No hitNo description
PfamPF138371.5E-1971156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MFVSDKPRSP IDFYKDDNNP SPTSRDINMM IDGDLQQPPQ QQHQHHQAIL GLGDSSSEDH  60
EIKAPKKRAE TWVQDETRIL IILRREMDGL FNTSKSNKHL WEQISTKMRE KGFDRSPAMC  120
TDKWRNILKE FKKAKHQDKG NGSGSAKMSY YNEIEDILRE RNKKVALYKS PATPPSIAKV  180
DSFMQFADKG FEDTGISFAP VEGNGRPTLN LERQLDHDGH PLAIPSADAV TENGVPPWNW  240
RETPGNGSDG QAYVGRIITV KFGEYTRRVG IDGTAEAIKE AIRSAFRLRT RRAFWLEDEE  300
QVVRSLDRDM PLRNYTLHVD EGIAVRVCHY DESDPLPVHQ EEKIFYTEED YRDFLARRGW  360
TCLREFDGFR NIDSNMVRNV YSMDDLQPGV LYRGIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4766153186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00380DAPTransfer from AT3G25990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004359m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723700.0AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395605.10.0trihelix transcription factor GT-4 isoform X4
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLV4MMW60.0V4MMW6_EUTSA; Uncharacterized protein
STRINGXP_006395605.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein