PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004330m
Common NameEUTSA_v10004330mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 406aa    MW: 45999.8 Da    PI: 6.5622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004330mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.86.4e-51501752128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s+
  Thhalv10004330m  50 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSE 142
                      79***************************.89***************888889***************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy+g+apkg++t+W+m+eyrl
  Thhalv10004330m 143 TSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 175
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-5749196IPR003441NAC domain
PROSITE profilePS5100556.27249196IPR003441NAC domain
PfamPF023652.9E-2551175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAIVSSTTSI ITMSNQVNEK GIEEDDHRGG HESRVHNDDE ADDHDHDMVM PGFRFHPTEE  60
ELIEFYLRRK VEGKRFNVEL ITFLDLYRYD PWELPAMAAI GEKEWYFYVP RDRKYRNGDR  120
PNRVTTSGYW KATGADRMIR SETSRPIGLK KTLVFYSGKA PKGTRTSWIM NEYRLPHHET  180
EKYQKAEISL CRVYKRPGVE DHPSVPRSLS TRHHHNSSSR LALRQQHNNS SSSNHSDNNL  240
NNNNLDKISA EYSGDGSTTT TTTTNSNSDV TIALANQNIY RPMPYGASNT PIISTSNNQD  300
DDETAIVDDL QRLVNYQISD GGNINHQYYQ IAQQFHNQQQ LNANANALQL VAAATTAALT  360
PQTQAALAMN MIPAGTIPNN ALWDMWNPLV PDGNKDHYTT NIPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-57401968165NO APICAL MERISTEM PROTEIN
1ut4_B7e-57401968165NO APICAL MERISTEM PROTEIN
1ut7_A7e-57401968165NO APICAL MERISTEM PROTEIN
1ut7_B7e-57401968165NO APICAL MERISTEM PROTEIN
3swm_A9e-574019611168NAC domain-containing protein 19
3swm_B9e-574019611168NAC domain-containing protein 19
3swm_C9e-574019611168NAC domain-containing protein 19
3swm_D9e-574019611168NAC domain-containing protein 19
3swp_A9e-574019611168NAC domain-containing protein 19
3swp_B9e-574019611168NAC domain-containing protein 19
3swp_C9e-574019611168NAC domain-containing protein 19
3swp_D9e-574019611168NAC domain-containing protein 19
4dul_A7e-57401968165NAC domain-containing protein 19
4dul_B7e-57401968165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004330m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0008740.0BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395785.10.0NAC domain-containing protein 35
SwissprotQ9ZVP80.0NAC35_ARATH; NAC domain-containing protein 35
TrEMBLV4MNE20.0V4MNE2_EUTSA; Uncharacterized protein
STRINGXP_006395785.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.20.0NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]