PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004295m
Common NameEUTSA_v10004295mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 419aa    MW: 46990.2 Da    PI: 6.9528
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004295mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33239297159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+s++prsYYrCt+  C vkk+vers++dp++v +tYeg+H h+
  Thhalv10004295m 239 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVACGVKKRVERSSDDPSIVMTTYEGQHSHP 297
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33224299IPR003657WRKY domain
SuperFamilySSF1182904.05E-29232299IPR003657WRKY domain
PROSITE profilePS5081132.041234299IPR003657WRKY domain
SMARTSM007743.3E-39239298IPR003657WRKY domain
PfamPF031062.4E-26240297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEKKIEEDHH HHHHHHQEQQ KEEFKSIKNT ETKIEHQELQ QQISQASSSS SSSSHMANLV  60
TSSDHHHHQL ELAGNNINLS SIFDTPISSL PFPYSYFEDH STNNPNSFLD LLRQDHHQFA  120
SSSNSSSFSF DAFPLPNNNN NLFFTDLPLP HHQPATTKAE SSEVVNTTPT SPNSTSVSSS  180
SNEAANDNIN KEATVKDQEE GDQQDQKGTK PQLKAKKKNQ KKAREARFAF LTKSDIDNLD  240
DGYRWRKYGQ KAVKNSPYPR SYYRCTTVAC GVKKRVERSS DDPSIVMTTY EGQHSHPFPM  300
TPRGHIGMLT SPILDHGATT ASSSSFTIPQ PRYLLTHQHH QPYNSMYNNS LSMINRSSSD  360
GTFVNPGSTS FPGYGYDMSQ ASTSTSSSIR DHGLLQDILP SQIRSDTINT QTKEEDKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-262322991077Probable WRKY transcription factor 4
2lex_A2e-262322991077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004295m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300590.0KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395056.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ41e-179WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLV4KQS30.0V4KQS3_EUTSA; Uncharacterized protein
STRINGXP_006395056.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-151WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]