PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004015m
Common NameEUTSA_v10004015mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 517aa    MW: 56138.8 Da    PI: 8.0167
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004015mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.6e-33249305259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgs++prsYY+Ct++ Cpvkkkvers  +++v+ei+Y+g+Hnhe
  Thhalv10004015m 249 DDGYNWRKYGQKQVKGSDYPRSYYKCTHPACPVKKKVERSL-NGQVTEIIYKGQHNHE 305
                      8****************************************.***************8 PP
2WRKY105.82.3e-33415473159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  Thhalv10004015m 415 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAANDPKAVVTTYEGKHNHD 473
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28239307IPR003657WRKY domain
PROSITE profilePS5081123.709243307IPR003657WRKY domain
SuperFamilySSF1182901.44E-25246307IPR003657WRKY domain
SMARTSM007744.4E-36248306IPR003657WRKY domain
PfamPF031063.6E-25249305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-37400475IPR003657WRKY domain
SuperFamilySSF1182908.5E-30407475IPR003657WRKY domain
PROSITE profilePS5081138.193410475IPR003657WRKY domain
SMARTSM007747.6E-39415474IPR003657WRKY domain
PfamPF031064.6E-26416473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAEKKEEEEE QQQPSTLKSS TGASRPTISL PPRPFGEMFF SGGVGFSPGP MTLVSNLFSD  60
PDEFKSFSQL LAGAMASPAA AVAAAAVAVT VHQTPVSSVG GGDGGGSGGG DVDPRFKQNR  120
PTGLMITQPP AMFTVPPGLS PATLLDSPSF FGLFSPIQGS FGMTHQQALA QVTAQAVQGN  180
NVQMQSQSEY PSSTQQQQTS MTELPSFSSG PRSQIPAPVQ DSSQVQRETS ETSVYEHRSQ  240
PQNADKPADD GYNWRKYGQK QVKGSDYPRS YYKCTHPACP VKKKVERSLN GQVTEIIYKG  300
QHNHEPPQNN KRGNNNGSSK GSDIATQFQS SNSSLNKSKR DPETSQVTTI EQISEASDSE  360
EVGNAETSVG GKQEDEPDPK RRNTEVRVSE PVSSSHRTVT EPRIIVQTTS EVDLLDDGYR  420
WRKYGQKVVK GNPYPRSYYK CTTPGCGVRK HVERAANDPK AVVTTYEGKH NHDVPAARTS  480
SHQLKPNNDL HNTSTVNSNQ QQQPIARLRL KEERIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-45249476878Probable WRKY transcription factor 4
2lex_A7e-45249476878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004015m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395712.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLV4KZY40.0V4KZY4_EUTSA; Uncharacterized protein
STRINGXP_006395712.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]