PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003564m
Common NameEUTSA_v10003564mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CAMTA
Protein Properties Length: 1064aa    MW: 119083 Da    PI: 6.3242
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003564mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1187.11.8e-58191362118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg ++vl+cyYah+e+n++f
  Thhalv10003564m  19 LSEaQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGRIDVLHCYYAHGEDNENF 112
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrrcyw+Le++l +iv+vhylevk
  Thhalv10003564m 113 QRRCYWMLEQDLMHIVFVHYLEVK 136
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143785.88815141IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-8518136IPR005559CG-1 DNA-binding domain
PfamPF038597.7E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.52E-14470556IPR014756Immunoglobulin E-set
SuperFamilySSF484033.58E-18652764IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.643653764IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-6654730IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-17654765IPR020683Ankyrin repeat-containing domain
CDDcd002046.95E-14659762No hitNo description
PROSITE profilePS5008810.633703735IPR002110Ankyrin repeat
SMARTSM002480.0046703732IPR002110Ankyrin repeat
SMARTSM000150.32878900IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.06E-7878928IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858880908IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021880899IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092901923IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304902926IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4904923IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MADRGSFGFA PRLDIEQLLS EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGRIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM SSSGIKENNS NSLSGTTSVN IDSIATPSST LSPLCEDADS  180
GDSRQANSSL QPNPELQTVA PQIRHQQNAR TINSYNPTSI LGNRHGWTSA PGIGIVSQVH  240
GNRVKESDSQ RSVDVPTWDA SFENSLARYQ NLPYNAPLTQ TQPFNAGLMP VEGNKEKGSL  300
LTAEHLRSPL QNQVNWQIPV QDSLPVQKWP MDSHSGMTDS TDLALLGQRA HENCGTFSSL  360
LGSQNQQPVG GSFQAPFTSI EAAYIPKLGP EDLLYEASAN QTLPLRKSLL KEEDSLKKVD  420
SFSRWVSNEL GEMEDLQMQS SSGGIPWTTV ETAAAASSLS PSLSEDQRFT IIDFWPKWTQ  480
TDSEVEVMVI GTFLLTPHEV TSYNWSCMFG EVEVPAEILV DGVLCCHAPP HEVGQVPFYI  540
TCSDRFSCSE VREFDFLPGS TKKLNTSDIY GAFTNEASLH LRFENLLARI SSVQKHHIFE  600
NVGVKRTKIS RMMLLKDEKE SLLPGTIQKD LPEPEATERL IREEFEDRLY IWLIHKVTEE  660
GKGPNILDEE GQGVLHLVAA LGYDWAIKPI LAAGVSINFR DANGWSALHW AAFCGREDTV  720
AVLVSLGADA GALTDPSPEL PLGKTAADLA YGNGHRGISG FLAESSLTSY LEKLTVDAKE  780
NSSADSSRVK AVQTVAERTA TPMSYGDVPE TLSMKDSLTA VFNATQAADR LHQVFRMQSF  840
QRKQLSEFGY NSEFDISDEL AVSFAAAKTK KPGHSNGAVH AAAVQIQKKY RGWKKRKEFL  900
LIRQRIVKIQ AHVRGHQVRK QYRAIIWSVG LLEKIILRWR RKGSGLRGFK RDTITKPPEP  960
VSAAPPPQED DYDFLKEGRK QTEERLQKAL TRVKSMAQYP EARAQYRRLL TVVEGFRENE  1020
ASSSSAMNNN NNTEEAANYN EEDDLIDIDS LLDNDTFMSL AFE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003564m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394184.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLV4K0S60.0V4K0S6_EUTSA; Uncharacterized protein
STRINGXP_006394184.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]