PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003431m
Common NameEUTSA_v10003431mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 199aa    MW: 21738.7 Da    PI: 10.9706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003431mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-202877255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Thhalv10003431m 28 RFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 77
                     69*******.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.1442885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-322885IPR001471AP2/ERF domain
CDDcd000181.39E-172885No hitNo description
SMARTSM003801.6E-382891IPR001471AP2/ERF domain
PfamPF008473.7E-142877IPR001471AP2/ERF domain
PRINTSPR003673.7E-112940IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-222986IPR016177DNA-binding domain
PRINTSPR003673.7E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAPKQTNASY ATVTEGGGGW KTTRKEVRFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAARAYDA AAREFRGSKA KTNFPLPGES TTVSHTAGGN RSPVMAAREM TRRVGVVGRF  120
PFACHRQQYV SGGLSPAAAG FFFDPSRAAA LRAELSRVYP VRFDPVNIEL SIGIQQTVKV  180
EPRKELNLDL NLAPPVDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-202986361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-202986664ATERF1
3gcc_A1e-202986664ATERF1
5wx9_A3e-2028851472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003431m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533720.0AK353372.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-25-G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403128.11e-143ethylene-responsive transcription factor 9
SwissprotQ9FE671e-100ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLE4MXX51e-142E4MXX5_EUTHA; mRNA, clone: RTFL01-25-G16
TrEMBLV4NET21e-142V4NET2_EUTSA; Uncharacterized protein
STRINGXP_006403128.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-80erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]