PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003426m
Common NameEUTSA_v10003426mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 321aa    MW: 36665.7 Da    PI: 7.2547
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003426mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-221558245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     +i+n+sn qvtfskRr g++KKA+ELS+LC+ae+a+i++s+  k
  Thhalv10003426m 15 KIKNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVYSPGRK 58
                     59**************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-31665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.516666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-26782IPR002100Transcription factor, MADS-box
CDDcd002651.27E-33778No hitNo description
PRINTSPR004044.2E-19828IPR002100Transcription factor, MADS-box
PfamPF003192.5E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEKKNKGRQK IEMVKIKNES NLQVTFSKRR SGLFKKASEL STLCGAEIAI IVYSPGRKAF  60
SFGHPNVETV IDRIVNNNPP PSHQPNNLQP SEIHQNYIIQ DLNNHLTQVM NQLEFEKKRN  120
EELKKIREIS KRPENWWEEP IEKLDLAQAY EFKGMLENLK KEVTFEAKKY FQANIPHQNF  180
DVGNSSNAPF GVDDGNNNFN VGNSSNASFG INGGDNYFYV GNSSNDFFGV DGSNNINLDF  240
DQYHQRRMVD MNASSNHGMI LPNHSIPFGN NNHGSITNEF VPRNNMNYIP DFNQNQNMTL  300
KEENKHHHVG HPPHSRSDYS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A7e-15787181MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B7e-15787181MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003426m
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013315.10.0agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-108AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLV4LXP00.0V4LXP0_EUTSA; Uncharacterized protein
STRINGXP_006403215.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-101AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]