PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003365m
Common NameEUTSA_v10003365mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 286aa    MW: 33950.5 Da    PI: 5.3428
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003365mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36201122103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+i+ed+++++++sws+++nsf+v+++++fa  +Lp yFkh+nf+SFvRQLn+YgFkk+++e+         weF++++F +g+++ll+
  Thhalv10003365m  20 FLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPDTFALICLPIYFKHNNFSSFVRQLNTYGFKKIDTER---------WEFANEYFLRGQRHLLK 104
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr++++
  Thhalv10003365m 105 NIKRRNTS 112
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5416109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.4E-3716109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-3120109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGYNLPTPLE GLKETGPTPF LTKTYNIVED SSTNNIVSWS RDNNSFIVWE PDTFALICLP  60
IYFKHNNFSS FVRQLNTYGF KKIDTERWEF ANEYFLRGQR HLLKNIKRRN TSSQTQTQSL  120
ENNRFRLERE IQGMRRDKAT LVTELVRLRQ KQESVKTYLR LMEEKLKITE RKQEMMMEFL  180
LKKIQKPSFL QSLRKRKQQE IENREQRQEM ISSYDGVEDH ETFVKAEPEE YCDQLGGVFG  240
YGDELHIASM EDQRQDGVEM EMDNEMIWNG VMLSEEICVL EEHLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-24211111131Heat shock factor protein 1
5d5v_B9e-24211111131Heat shock factor protein 1
5d5v_D9e-24211111131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00541DAPTransfer from AT5G43840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003365m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4470351e-135DQ447035.1 Arabidopsis thaliana clone pENTR221-At5g43840 heat shock transcription factor family protein (At5g43840) mRNA, complete cds.
GenBankDQ6533451e-135DQ653345.1 Arabidopsis thaliana clone 0000012923_0000009316 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403174.10.0heat stress transcription factor A-6a
SwissprotQ1PDN31e-152HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLV4LQ790.0V4LQ79_EUTSA; Uncharacterized protein
STRINGXP_006403174.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-144heat shock transcription factor A6A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]