PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003250m
Common NameEUTSA_v10003250mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 309aa    MW: 34961.1 Da    PI: 7.5506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003250mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30107163258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers ++p++ +itYeg H h
  Thhalv10003250m 107 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDEPNTYIITYEGFHLH 163
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28100163IPR003657WRKY domain
PROSITE profilePS5081126.67101163IPR003657WRKY domain
SuperFamilySSF1182901.96E-25105163IPR003657WRKY domain
SMARTSM007748.6E-35106165IPR003657WRKY domain
PfamPF031064.5E-25107163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAEEELPEWR RRYGNEAVDE LFVNEPQEHL RLMPNEDSIT NKLLVSSTLY SGPRIQDIAN  60
ALAVVEPLTH PSRQISGSTN PILERGTSSK ADRFTLKVKS SCNGMNDDGY KWRKYGQKSI  120
KNSPNPRSYY KCTNPICNAK KQVERSIDEP NTYIITYEGF HLHFTYPFFI PKRTHRPNKK  180
PKILKHDAQC KPHFENKQKS QTQEESKQTQ LVEPTHQNHS AHDAQENTPA NLGDELFFSV  240
DQCRRRQGLL EDVVAPAMTN VTTREGVLAA SCSSSLTSSP PLSPSSLCWS PNFNVGFSDE  300
ILESFGLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-191071631874Probable WRKY transcription factor 4
2lex_A9e-191071631874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003250m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013341.10.0probable WRKY transcription factor 49
SwissprotQ9FHR71e-131WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLV4NF490.0V4NF49_EUTSA; Uncharacterized protein
STRINGXP_006403268.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-122WRKY DNA-binding protein 49