PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10003215m | ||||||||
Common Name | EUTSA_v10003215mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | SBP | ||||||||
Protein Properties | Length: 423aa MW: 47182.8 Da PI: 8.9578 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.1 | 1.7e-40 | 170 | 245 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++ Thhalv10003215m 170 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 245 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.1E-33 | 163 | 231 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.795 | 167 | 244 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.4E-38 | 168 | 248 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.2E-31 | 170 | 243 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MECNAKPPLQ WEWENLISFG TSSAEIPRKL RPMDWEIDGF DCTSLYSSSF AAVAYGGSSG 60 SDLAHAFSKS SKSTSISSSS AEVRTYNFTS EAGESEEFVK GMNTSPSLEL SFGSGDPVLG 120 LKLGKRTYFE DFLDVENAKV SALPVSLASS SASPVKKSKS VSQRLQTPHC QVEGCNLDLS 180 SAKDYHRKHR ICENHSKFPK VVVSGVERRF CQQCSRFHCL SEFDEKKRSC RRRLSDHNAR 240 RRKPNPGRTY DGKHQMDFVW NRFALIHPRS EEKFLWPSSK PLPSKGLMPQ HAKTEMSNKL 300 FTEQCGFGLL DPKTKTTRAE LFSKDKVTIS SHMGTSQDLD GALSLLSNST SWVSSDQPRR 360 FTLDHHPTSN VQPVAHRSAS QLNSVSGYWQ PNPPAVEPSN ALHRNGVGQF NESFFSLNQF 420 YN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-26 | 170 | 243 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 242 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10003215m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353181 | 0.0 | AK353181.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403270.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_006403271.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_024013317.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_024013318.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q9S840 | 0.0 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | E4MXD4 | 0.0 | E4MXD4_EUTHA; mRNA, clone: RTFL01-38-E06 | ||||
TrEMBL | V4LXV8 | 0.0 | V4LXV8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403270.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6562 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 0.0 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10003215m |
Entrez Gene | 18020583 |