PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003131m
Common NameEUTSA_v10003131mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HB-other
Protein Properties Length: 1381aa    MW: 155436 Da    PI: 5.7081
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003131mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-182076157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     ++kR   t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k
  Thhalv10003131m 20 KSKRKMKTAAQLEVLENTYAAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 76
                     679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-17876IPR009057Homeodomain-like
SuperFamilySSF466895.56E-151676IPR009057Homeodomain-like
PROSITE profilePS5007116.3251777IPR001356Homeobox domain
SMARTSM003891.7E-161981IPR001356Homeobox domain
CDDcd000861.55E-132077No hitNo description
PfamPF000466.8E-162076IPR001356Homeobox domain
PROSITE profilePS5082715.995524583IPR018501DDT domain
SMARTSM005712.0E-22524583IPR018501DDT domain
PfamPF027912.7E-16525580IPR018501DDT domain
PfamPF050661.1E-14706774IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156126.6E-7901939IPR028942WHIM1 domain
PfamPF156138.0E-1310701142IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1381 aa     Download sequence    Send to blast
MEGVCEEAEK NKTPEGAESK SKRKMKTAAQ LEVLENTYAA EPYPSEAIRA DLSVKLNLSD  60
RQLQMWFCHR RLKDRKSTTP SKRQRKEPPA SSTAVESSIP AVNAGDLVAG NEHNSFGHEL  120
DSRRTPRGGG GGGLTVVRRF SEPSSAEVRA VGYVEAQLGE RLRDNGPILG MEFDPLPPGA  180
FGMPIELPSH RKAARQAFET NIYVRSDVKP VKESVRTIRE YQFLPEQPSS KTDHSERASP  240
SHHFGVPLDA SVLRASSVSA GHRDDYKVSP RIPNLNLSTH QGKHVFSPNL GEYDSPYQKP  300
YVDTGNLNHE DPFIQSEREV GNDDDDGEDD VMQLERKRKS EEARISREVE AHEKRIRKEL  360
EKQDMLRRKR EEQMRKEMER QDRERRKEEE RLLRERQREE ERYLKEQLRE RQRREKFLKK  420
ETIRAEKMRQ KEEMRRVKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL  480
PSMLALDFET LQNLEAYKDK KVIFPPTSVK LKKPFAVKPW NGSDENVANL LMVWRFLITF  540
ADVLGLWPFT LDEFTQSFHD YDPRLMGEIH IVLLKTIIKD IEGVARTISM GVGANQNAAA  600
NPGGGHPHVV EGAYAWGFDI RNWRRNLNVF TWPEILRQLA LSAGLGPQLK KPDIKTMSVH  660
DDNEANNSEN VIFNLRVGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF AAFHVLSIEG  720
EKGLTILDVA DKIQKSGLRD LTTSRTPEAS VAAALSRDSK LFERVAPSTY CVRASYRKDV  780
GDAETIFAEA RERIRMFKSG VTDVEDVDDA ERDEDSESDV ADDPEVDLNL KKVDPDAVEI  840
ENLAGVEPVL ENGKLETVTM KTEQVLPLKD EKRDDSLANE ALEDPVANDE DNACFDESKL  900
GEQWVQGLVE GDYSNLSVQE RLNALVALIG IAIEGNTIRI ALEERLEVAS ALKKQMWGEV  960
QLDKRWKEES LIRANYLSYP TPKPGLLNNA TAASGNQESS SADVTPISSQ DPLSLPQIDV  1020
NTGPSLPSQE NVSGMESLQY QQGYTADRER LRAQLKAYVG YKAEELYVYR SLPLGQDRRR  1080
NRYWRFSASA SRNDPGCGRI FVELQDGRWR LIDSEEGFDY LVKSLDVRGV RESHLHFMLL  1140
KIEASFKDAV RRNVDCSISS SLDSDTEEIS TTFKMELGDH HNAMARFRSF EKWMWDNTLH  1200
PGALSAFKYG AKTSGPLLRI CRICAELNFV EDVCCPSCGQ MHGGSNVGEL CFAEQVAQLG  1260
DNSKGGDPLF ILRGSVSSPL RIRLLKIQLA LIEASLPPEG LQAFWTENLR KSWGLKLLSS  1320
SSPEELHQVL TALEVALKRD FLSSNFETAS ELLGLPEESL ASDLSCSGNV LPWVPKTTGV  1380
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003131m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052391e-128AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1.
GenBankCP0026881e-128CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403132.20.0LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLV4L2Q50.0V4L2Q5_EUTSA; Uncharacterized protein
STRINGXP_006403132.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator