PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10002961m | ||||||||
Common Name | EUTSA_v10002961mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 173aa MW: 19196.2 Da PI: 8.1008 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.3 | 4.2e-32 | 16 | 148 | 3 | 105 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec....eaesssss 81 +k ++++++h kvggRdRR+R++++ca ++F+L+++LGf++d++t+ WLl++a+pai ++tg+ s + ++ +++ Thhalv10002961m 16 KKAKSSKDRHLKVGGRDRRIRIPVSCASQLFQLTKKLGFKTDGETVGWLLKNAEPAISAATGDgvtttdndvinS------SgnhyTNCDNVI- 102 68899**********************************************************765444333320......111112222222. PP TCP 82 asnsssg............................kaaksaakskksqksaa 105 + +++ a+ +++ +++++ Thhalv10002961m 103 ------SnnhfpymgvnyghhdsefpvptmmdpapSSSFPANDTRRMNHRTQ 148 ......0223334456666543344444444444322222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.9E-28 | 20 | 137 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.361 | 21 | 75 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDSRNENNDN NRCPQKKAKS SKDRHLKVGG RDRRIRIPVS CASQLFQLTK KLGFKTDGET 60 VGWLLKNAEP AISAATGDGV TTTDNDVINS SGNHYTNCDN VISNNHFPYM GVNYGHHDSE 120 FPVPTMMDPA PSSSFPANDT RRMNHRTQAQ FQLDEELAAA EKAFVQSLKQ RE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00390 | DAP | Transfer from AT3G45150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10002961m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006419068.1 | 1e-129 | transcription factor TCP16 | ||||
Swissprot | Q9M1U4 | 6e-46 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | V4L1K6 | 1e-128 | V4L1K6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006419068.1 | 1e-128 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15750 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 1e-41 | TCP domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10002961m |
Entrez Gene | 18013607 |
Publications ? help Back to Top | |||
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