PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10002883m

Common Name

EUTSA_v10002883mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Trihelix

Protein Properties

Length: 337aa MW: 39489.1 Da PI: 4.3643

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10002883m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.1	1.1e-13	90	174	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W evs+k+ +e e++ +qC+ +nl+++y+k+k+ +k + ss++++f++++ Thhalv10002883m 90 WREQEAFVLLEVWGDRFLQLNRRSLRNEDWNEVSEKVsEELRSEKTETQCRRMVDNLKRKYRKEKTKVEK-SGLGSSKWSFFNKMD 174 ***********************************777889******************99888.589999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.6E-20	89	176	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGDSEDETGY PKKFYSLNRQ NHPMYTRPIS KRHAYYHEEE DDQEDDEIEQ EEDEGEYSHR 60 FQKRQKPNKP VSGYEFAGGP SSDSKVAYDW REQEAFVLLE VWGDRFLQLN RRSLRNEDWN 120 EVSEKVSEEL RSEKTETQCR RMVDNLKRKY RKEKTKVEKS GLGSSKWSFF NKMDMLLGSS 180 PKSESGLACG VDSGEFVFMN TKVYLDKSNG FDEMMDSPGD SEDDDDDDND DSDREVDYER 240 KKKMNDAASY KLLADSVERF GKVYEKMEKS KKEQMKELEK MRADFQKDLE LQKKQIVERA 300 QSEIARLREE EENLADDDVS EDEEMANDSD VNLSDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10002883m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418742.1	0.0	trihelix transcription factor ASIL2
TrEMBL	V4LBN5	0.0	V4LBN5_EUTSA; Uncharacterized protein
STRING	XP_006418742.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-150	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thhalv10002883m
Entrez Gene	18013766