PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10002643m | ||||||||
Common Name | EUTSA_v10002643mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GRF | ||||||||
Protein Properties | Length: 267aa MW: 30573.2 Da PI: 9.1398 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71 | 1.5e-22 | 82 | 123 | 1 | 42 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 daepgrCrRtDGKkWRCs+++ ++k+CErH+hrg++rs+++ Thhalv10002643m 82 DAEPGRCRRTDGKKWRCSKEASTDSKYCERHMHRGKNRSSRK 123 79*************************************985 PP | |||||||
2 | QLQ | 59.8 | 7.6e-21 | 6 | 41 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l++KyLaan+PvPp+Ll+ i++ Thhalv10002643m 6 PFTESQWEELENQALVFKYLAANVPVPPHLLFLIRR 41 8*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 8.5E-14 | 5 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.646 | 6 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.1E-15 | 6 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.407 | 82 | 126 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-18 | 83 | 123 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MATRIPFTES QWEELENQAL VFKYLAANVP VPPHLLFLIR RPFLFSSSSS SSSSSSSSSP 60 STFLSPHFGW NVYEMGIRRK IDAEPGRCRR TDGKKWRCSK EASTDSKYCE RHMHRGKNRS 120 SRKPLPPLPP PQFTFSSTPS LSLDSSLSSS SRVRSKRRGY MDDFFSIEPS GSIRSSSGLA 180 VEDYDGSCGY ESLKQREKQP NRSCFILGTD LRTRERPLML EEKLKQREDK DYEDEDEEEE 240 QRSKRVYKFL DEWPSSKSSV STSLFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00263 | DAP | Transfer from AT2G06200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10002643m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060586 | 1e-114 | AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds. | |||
GenBank | AY125572 | 1e-114 | AY125572.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396116.2 | 0.0 | LOW QUALITY PROTEIN: growth-regulating factor 6 | ||||
Swissprot | Q9ZQ12 | 1e-117 | GRF6_ARATH; Growth-regulating factor 6 | ||||
TrEMBL | V4KGI1 | 0.0 | V4KGI1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396116.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14101 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06200.1 | 2e-90 | growth-regulating factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10002643m |
Entrez Gene | 18013571 |
Publications ? help Back to Top | |||
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