PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002517m
Common NameEUTSA_v10002517mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 469aa    MW: 51602.2 Da    PI: 7.6706
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002517mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30114172160
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers   +++v+++Y geH+h+k
  Thhalv10002517m 114 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSP-GGQIVDTVYFGEHDHPK 172
                      58****************************************.***************85 PP
2WRKY105.82.3e-33286344159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h+
  Thhalv10002517m 286 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSHDTKLLITTYEGKHDHD 344
                      58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.332109173IPR003657WRKY domain
SuperFamilySSF1182909.02E-25110173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-26111173IPR003657WRKY domain
SMARTSM007741.4E-34114172IPR003657WRKY domain
PfamPF031068.7E-24115171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-34272346IPR003657WRKY domain
SuperFamilySSF1182901.05E-28280346IPR003657WRKY domain
PROSITE profilePS5081134.991281346IPR003657WRKY domain
SMARTSM007741.3E-38286345IPR003657WRKY domain
PfamPF031063.0E-26287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAEVGKVLAS DMELANSSET KPADVVATDK MEAAPVSTTE TVVESSETEQ SSGEIPESTD  60
CKKLLELVPD TTAASQSEVD VASEKAPKIP ESSTVLSLQS GSEGSSPFIR EKVMEDGYNW  120
RKYGQKLVKG NEFVRSYYRC THPNCKAKKQ LERSPGGQIV DTVYFGEHDH PKPLGGAVPI  180
NQDKRSDVIT TASKEKSSGP SVQTYSQSQT EPPKIHGGLH VSVIPSADDV KVLQTSRTKG  240
DNVHKDSTSP ASKRRKKGGN MEHIPMERSN NESRNVVQTQ TLFDIVNDGY RWRKYGQKSV  300
KGSPYPRSYY RCSSSGCPVK KHVERSSHDT KLLITTYEGK HDHDMPPGRI VTHNNTLDSE  360
VDDKELSPKD TEANKTPQSS ALQTITKDQH VVDYSRKKAK TNGFEKSLDQ GPVLDAKPKE  420
QIKERSEVTK DQAANHKKSD DKTTACHENT ARTLESQEQK PKAESGQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-47113348176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002517m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530570.0AK353057.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418534.10.0WRKY transcription factor 1
SwissprotQ9SI370.0WRKY1_ARATH; WRKY transcription factor 1
TrEMBLE4MX100.0E4MX10_EUTHA; mRNA, clone: RTFL01-10-D23
TrEMBLV4L0100.0V4L010_EUTSA; Uncharacterized protein
STRINGXP_006418533.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.20.0zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]