PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10002516m | ||||||||
Common Name | EUTSA_v10002517mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 469aa MW: 51602.2 Da PI: 7.6706 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 114 | 172 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers +++v+++Y geH+h+k Thhalv10002516m 114 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSP-GGQIVDTVYFGEHDHPK 172 58****************************************.***************85 PP | |||||||
2 | WRKY | 105.8 | 2.3e-33 | 286 | 344 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h+ Thhalv10002516m 286 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSHDTKLLITTYEGKHDHD 344 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.332 | 109 | 173 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-25 | 110 | 173 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-26 | 111 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-34 | 114 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-24 | 115 | 171 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-34 | 272 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-28 | 280 | 346 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.991 | 281 | 346 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 286 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 287 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MAEVGKVLAS DMELANSSET KPADVVATDK MEAAPVSTTE TVVESSETEQ SSGEIPESTD 60 CKKLLELVPD TTAASQSEVD VASEKAPKIP ESSTVLSLQS GSEGSSPFIR EKVMEDGYNW 120 RKYGQKLVKG NEFVRSYYRC THPNCKAKKQ LERSPGGQIV DTVYFGEHDH PKPLGGAVPI 180 NQDKRSDVIT TASKEKSSGP SVQTYSQSQT EPPKIHGGLH VSVIPSADDV KVLQTSRTKG 240 DNVHKDSTSP ASKRRKKGGN MEHIPMERSN NESRNVVQTQ TLFDIVNDGY RWRKYGQKSV 300 KGSPYPRSYY RCSSSGCPVK KHVERSSHDT KLLITTYEGK HDHDMPPGRI VTHNNTLDSE 360 VDDKELSPKD TEANKTPQSS ALQTITKDQH VVDYSRKKAK TNGFEKSLDQ GPVLDAKPKE 420 QIKERSEVTK DQAANHKKSD DKTTACHENT ARTLESQEQK PKAESGQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-47 | 113 | 348 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10002516m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353057 | 0.0 | AK353057.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418534.1 | 0.0 | WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 0.0 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | E4MX10 | 0.0 | E4MX10_EUTHA; mRNA, clone: RTFL01-10-D23 | ||||
TrEMBL | V4L010 | 0.0 | V4L010_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418533.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7949 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 0.0 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10002516m |
Entrez Gene | 18013953 |
Publications ? help Back to Top | |||
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