PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001792m
Common NameEUTSA_v10001792mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 299aa    MW: 32097.2 Da    PI: 4.6786
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001792mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-1896145255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Thhalv10001792m  96 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 145
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3196154IPR001471AP2/ERF domain
PROSITE profilePS5103223.18296153IPR001471AP2/ERF domain
PfamPF008479.5E-1396145IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2196153IPR016177DNA-binding domain
SMARTSM003804.7E-3796159IPR001471AP2/ERF domain
PRINTSPR003672.6E-1097108IPR001471AP2/ERF domain
CDDcd000181.53E-3197155No hitNo description
PRINTSPR003672.6E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
METQIIIEKS TSQVTFISAV SSSSAAASLS SPTTSSSSSS SSSSSSSTTS NFPEENNSKR  60
KASRRSSSSS GSLAVQEDED DVGKRRKVNA GDKHPTYRGV RMRSWGKWVS EIREPRKKSR  120
IWLGTYPTAE MAARAHDVAA LAIKGATAFL NFPELSGELP RPVTNSPKDI QAAATSAAVN  180
WQDSATVSLR VNNSDGAELA EAEPSRAVMA QSLSSSVVCS SDTMTQQESS ETSCASTTTS  240
FADKDSDEEK LFDLPDLFTD GNEMMIRNDA FCYYSSTWQL CGADAGFRLE EPFFCLND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1889154773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001792m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397675.10.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-126ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLV4LH860.0V4LH86_EUTSA; Uncharacterized protein
STRINGXP_006397675.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-111ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]