PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001785m
Common NameEUTSA_v10001785mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 285aa    MW: 32436.8 Da    PI: 10.6478
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001785mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-1419113199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefe 91 
                      ffk+l  +d +++++   p kf +    +   + + +++l+  +grsW+vkl  +k  g+y+++ +GW++F  +n+L +++f++F+ +g+++  
  Thhalv10001785m  19 FFKILADEDLSSEAMRFNPQKFWRGSvcK---NIPHKVILKVVWGRSWKVKL--SKFMGSYLMEkNGWEKFLYDNKLGDREFLTFTNEGNNCL- 106
                      89999999999999888899998766433...46778***************..999999777648********************7666666. PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                       +v +f+k
  Thhalv10001785m 107 -TVNIFEK 113
                      .9999987 PP
2B355.79.2e-182052791696
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      l++p++fa+ h+ k  ++ +l++ d++g+sW+v + ++ ++   ++++GW+  +++ gL +gD+++F+l++   +e+v++v
  Thhalv10001785m 205 LIIPNDFAKMHMPK--KTAKLIIHDPKGKSWKVVY-FCSNKT-KIFSSGWRILARDYGLAVGDVCTFRLIKP--KEMVLQV 279
                      79*******99855..5568***************.444443.46999********************9974..4445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-1713115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-1514114IPR015300DNA-binding pseudobarrel domain
CDDcd100178.48E-1218111No hitNo description
PfamPF023628.0E-1219113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.94219114IPR003340B3 DNA binding domain
SMARTSM010193.7E-1019114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-21185280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-22186280IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.521190283IPR003340B3 DNA binding domain
CDDcd100171.23E-16193280No hitNo description
SMARTSM010192.8E-17193283IPR003340B3 DNA binding domain
PfamPF023627.3E-15205277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRNRAFGKI QEDRKKTSFF KILADEDLSS EAMRFNPQKF WRGSVCKNIP HKVILKVVWG  60
RSWKVKLSKF MGSYLMEKNG WEKFLYDNKL GDREFLTFTN EGNNCLTVNI FEKNCKEILQ  120
PQRTTTTVIA SSSSKDVKKE EMSCVIAEST GRGAKRKNKR AEEEEERKKS KKMKKKAGNN  180
VYGASSSSSA ATFSLTIKQS HLLVLIIPND FAKMHMPKKT AKLIIHDPKG KSWKVVYFCS  240
NKTKIFSSGW RILARDYGLA VGDVCTFRLI KPKEMVLQVS HASP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001785m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010696.10.0B3 domain-containing protein At5g18090
TrEMBLV4L5Z10.0V4L5Z1_EUTSA; Uncharacterized protein
STRINGXP_006397596.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.15e-64B3 family protein