PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001600m
Common NameEUTSA_v10001600mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 249aa    MW: 29407.6 Da    PI: 4.7406
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001600mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-193385456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++f++eq++ Le +Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Thhalv10001600m 33 QRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 85
                     579*************************************************9 PP
2HD-ZIP_I/II120.96.5e-3932123293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++++ L+++y+ l+++ e+L+ke+++L +el++
  Thhalv10001600m  32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEFNILRQNYNDLASQFESLKKEKQALVSELQR 123
                      68**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-181689IPR009057Homeodomain-like
PROSITE profilePS5007117.5082787IPR001356Homeobox domain
SMARTSM003891.0E-153091IPR001356Homeobox domain
CDDcd000863.85E-133388No hitNo description
Gene3DG3DSA:1.10.10.603.7E-183393IPR009057Homeodomain-like
PfamPF000463.5E-163385IPR001356Homeobox domain
PRINTSPR000317.4E-65867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000317.4E-66783IPR000047Helix-turn-helix motif
PfamPF021831.3E-1487129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTEGEEYSPI MMSADPFMSM KKMKKSNQKN NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV  60
QLARELGLQP RQVAIWFQNK RARWKSKQLE TEFNILRQNY NDLASQFESL KKEKQALVSE  120
LQRLNEAMQK TQEEERQCCG DQAVVALSST DHESEIEENP RREQEELRPE MEMCEKGHHD  180
HHDDGHNNNN NIKREYLGGF EEEADQLMNI VEPADSCLTS SDDWRGFRSD TNLLDQSSSN  240
YPWWDFWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001600m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528710.0AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397859.10.0homeobox-leucine zipper protein ATHB-7
SwissprotP468971e-147ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLE4MWH40.0E4MWH4_EUTHA; mRNA, clone: RTFL01-14-L20
TrEMBLV4LAA50.0V4LAA5_EUTSA; Uncharacterized protein
STRINGXP_006397859.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-116homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]