PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001549m
Common NameEUTSA_v10001549mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 324aa    MW: 34813.6 Da    PI: 8.4228
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001549mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.3e-18157211256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq  +Lee F+++ +++ +++  LA++l+L +rqV vWFqNrRa+ k
  Thhalv10001549m 157 RKKLRLSKEQAVVLEETFKEHTTLNPKQKLALARQLNLRTRQVEVWFQNRRARTK 211
                      788899***********************************************98 PP
2HD-ZIP_I/II123.87.9e-40157246191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlskeq+ +LEe+F+e+++L+p++K +lar+L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l
  Thhalv10001549m 157 RKKLRLSKEQAVVLEETFKEHTTLNPKQKLALARQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLHKEVSELR-AL 246
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.2E-321117IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.1E-19137211IPR009057Homeodomain-like
SuperFamilySSF466891.5E-18141214IPR009057Homeodomain-like
PROSITE profilePS5007117.167153213IPR001356Homeobox domain
SMARTSM003891.4E-14155217IPR001356Homeobox domain
PfamPF000462.3E-15157211IPR001356Homeobox domain
CDDcd000869.28E-14157214No hitNo description
PROSITE patternPS000270188211IPR017970Homeobox, conserved site
SMARTSM003402.5E-26213256IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-11213247IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009725Biological Processresponse to hormone
GO:0010218Biological Processresponse to far red light
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGERDDGLGL SLSLGFSQQK EPCPRLNLLP LTTSSSSSSF HHMHNHNNNH LQKKIQHNSW  60
PHLFQSSEKN PDAGSFGRGF DVNRAPSAAA VVDLEEDGTG VSSPNSTVSS VSGNKRDLAA  120
ARGGGGDENE GERASCSHGG GSGGSDDEDG GNGDGSRKKL RLSKEQAVVL EETFKEHTTL  180
NPKQKLALAR QLNLRTRQVE VWFQNRRART KLKQTEVDCE YLKRCCDNLT EENRRLHKEV  240
SELRALKLSP HLYMHMTPPT TLTMCPSCER VSASSSSTAV AAPPSSSSAA SGGGGWIPTV  300
VGRPSPQRPT PCAAISLQSR LAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161SRKKLRL
2205213RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001549m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397669.10.0homeobox-leucine zipper protein ATHB-4
SwissprotP929531e-151ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLV4L9T20.0V4L9T2_EUTSA; Uncharacterized protein
STRINGXP_006397669.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.11e-101homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]