PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001548m
Common NameEUTSA_v10001548mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 327aa    MW: 36967.2 Da    PI: 6.7406
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001548mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-075392438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Ht 38
                       C+ +++ + + fC + ++llC++C  ++H++     H+
  Thhalv10001548m 53 LLCDSCDDSPSSVFCDSERSLLCQNCDWQHHHSsssppHS 92
                     57***************************86445666665 PP
2CCT59.11.5e-20282325144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R+ al+RYk K+k+R++eK+irYesRK++AesR Rv+GrF+k++
  Thhalv10001548m 282 RNSALSRYKAKKKSRRYEKHIRYESRKVRAESRTRVRGRFAKAD 325
                      899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627754IPR000315B-box-type zinc finger
SMARTSM003362.3E-12754IPR000315B-box-type zinc finger
CDDcd000213.61E-51054No hitNo description
PROSITE profilePS501199.845096IPR000315B-box-type zinc finger
CDDcd000213.07E-45481No hitNo description
SMARTSM003361.55596IPR000315B-box-type zinc finger
PfamPF062031.0E-14282324IPR010402CCT domain
PROSITE profilePS5101714.386282324IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAEELLGSHR VCDYCDSSVA LVYCKADSAK LCLACDKHVH VTNQLFSKHF RSLLCDSCDD  60
SPSSVFCDSE RSLLCQNCDW QHHHSSSSPP HSLRRPVEGF SGCPSVSDFL ALVGLHDLTD  120
KSLLLWDTPP EEEETVALHD LTTASSHHNF RAMDVPPLPK NRHATCGRHR DEMIRQLREL  180
SRSEPNCLKY ETPLDAGFQF LNDDDLFSTC DEASGLKWFE DQQDEQFPYS SLHNKFPSES  240
DDYVSRRGCP PPESSSVMVV PVSTSSASRS ALPCHEINSL ERNSALSRYK AKKKSRRYEK  300
HIRYESRKVR AESRTRVRGR FAKADP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001548m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935981e-67AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890.
GenBankAC0053091e-67AC005309.3 Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence.
GenBankAC0060721e-67AC006072.4 Arabidopsis thaliana chromosome 2 clone T9J23 map CIC06C03, complete sequence.
GenBankBT0234131e-67BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
GenBankCP0026851e-67CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397983.10.0zinc finger protein CONSTANS-LIKE 13
SwissprotO822561e-147COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLV4N2K70.0V4N2K7_EUTSA; Uncharacterized protein
STRINGXP_006397983.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-111B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]