PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001528m
Common NameEUTSA_v10001528mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 347aa    MW: 36711.8 Da    PI: 10.3281
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001528mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.58.3e-3772150279
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 
                      + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +
  Thhalv10001528m  72 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLK 150
                      57999***********************************************************888884442111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3077154IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32778132IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTTIKKQEIG GKDERLRSVD QSIINGIRNV ETSKPLKANP TASLEPKAEP SLEAATPSIS  60
MSLAPPSTMG PPLKRASTKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW  120
LLENAEPAII AATGTGTVPA IAMSVNGTLK IPTTTNTDSD LGENPAKKRR KRPSNSEYID  180
INDAVSVCSG LAPISTATIQ PLQAPASTVA QQTLPQGMIP MWAIPSNAVI PAVGAFFFVP  240
QVAGPSNQPQ MLAFPAAASP SSYVAAVQQA SSMARPPPVH VVPSNGVITG SKPSNTTSIM  300
APSSSSDIRI GGSSSTTHML RDFSLEIYDK QELHQFMTTT TRSSNH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001528m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525890.0AK352589.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397747.10.0transcription factor TCP9
SwissprotO646471e-173TCP9_ARATH; Transcription factor TCP9
TrEMBLV4KMR60.0V4KMR6_EUTSA; Uncharacterized protein
STRINGXP_006397747.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-168TCP family protein