PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001503m
Common NameEUTSA_v10001503mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 370aa    MW: 40438.4 Da    PI: 9.1389
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001503mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.5e-3975136263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss
  Thhalv10001503m  75 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 136
                      6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2674126IPR003851Zinc finger, Dof-type
PfamPF027016.2E-3377133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90179133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009416Biological Processresponse to light stimulus
GO:0009845Biological Processseed germination
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDATKWTQGF QEMMNVKPME QIMIPNNNTH QSNTTSNARP NTILTSNGVS AAGATVSGVS  60
NNNNTAVVVE RKTRPQEKLN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR  120
NVPVGGSSRK NKRSSSSSSS SNILQTTPSS LGLTTPLPDL NPPILFSNQI PNKSKGSSQD  180
LNLLSFPVMQ DQHHHHHHVH MSQFLQMPKM EGNGNMTHQQ PSSSSSLYGS SSSPVSALEL  240
LRTGVNVSSR SGINSFMPSG PMMDSSNNVL YTSSGFPTMV DYKPSNLSFS TDHQGLGHSN  300
NNRSEDGHHQ GRVLFPFGDQ MKELSSSITQ EVDHDDNQQQ KSHGNNNNSS PNNGYWSGMF  360
STTGGGSSW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00319DAPTransfer from AT2G46590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001503m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528590.0AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397852.10.0dof zinc finger protein DOF2.5
SwissprotQ9ZPY00.0DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLV4KN230.0V4KN23_EUTSA; Uncharacterized protein
STRINGXP_006397852.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.21e-173Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]