PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10001460m

Common Name

EUTSA_v10001460mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GRF

Protein Properties

Length: 430aa MW: 48266.4 Da PI: 9.9537

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10001460m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75	8.1e-24	83	127	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCs++vl +k+CErH+hrgr+rsrk +e+ Thhalv10001460m 83 EPEPTRCRRTDGKKWRCSNKVLLFQKYCERHMHRGRKRSRKLVES 127 69***************************************9986 PP
2	WRC	64.7	1.3e-20	306	345	1	40
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 d+epgrCrRtDGKkWRCs+ +l+g+k+C++H+hrg +++ Thhalv10001460m 306 DNEPGRCRRTDGKKWRCSKVALSGQKYCDKHMHRGIKKKH 345 68*********************************88765 PP
3	QLQ	37.5	7.2e-14	20	55	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQl ++ +Q+l+y+y+ a++ vP++L+++i++ Thhalv10001460m 20 WMKAAQLLEFQMQALVYRYIEAGLRVPHHLVVPIWN 55 789********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.3E-6	19	55	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	15.078	20	55	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.3E-7	22	54	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.205	83	127	IPR014977	WRC domain
Pfam	PF08879	4.5E-20	84	126	IPR014977	WRC domain
PROSITE profile	PS51667	20.982	306	350	IPR014977	WRC domain
Pfam	PF08879	4.3E-17	308	346	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MQSPKMEEEE EERRKKKWPW MKAAQLLEFQ MQALVYRYIE AGLRVPHHLV VPIWNSLALS 60 SSSSSYLIHQ NHHSSSLLSA KVEPEPTRCR RTDGKKWRCS NKVLLFQKYC ERHMHRGRKR 120 SRKLVESSSY VVVSSPASTK HDNTYGLDSS NESQNVFHGT MSASNNAQVV TIASLPSARV 180 CDNTTRPSLV ITESTNKSMS HGVKSRRTVE MSYDDFIKQR DSSTCVRVVP VQGDERLPSV 240 QKFFPEASDN FSAAAKFSSN RKNEIIARSR EWKNMNVNGG FPGIHFSPDT VLQGRGGFRL 300 HRVETDNEPG RCRRTDGKKW RCSKVALSGQ KYCDKHMHRG IKKKHRVDTT NSHDNAGFTP 360 LTVKTAARSL SCKDGDDQKL SVSVLGIPLP RVSDEKSTSS CSTDTTITDT ALRGEEDNEE 420 VLSLCSSGV*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MQSPKMEEEE EERRKKKWPW MKAAQLLEFQ MQALVYRYIE AGLRVPHHLV VPIWNSLALS  60
SSSSSYLIHQ NHHSSSLLSA KVEPEPTRCR RTDGKKWRCS NKVLLFQKYC ERHMHRGRKR  120
SRKLVESSSY VVVSSPASTK HDNTYGLDSS NESQNVFHGT MSASNNAQVV TIASLPSARV  180
CDNTTRPSLV ITESTNKSMS HGVKSRRTVE MSYDDFIKQR DSSTCVRVVP VQGDERLPSV  240
QKFFPEASDN FSAAAKFSSN RKNEIIARSR EWKNMNVNGG FPGIHFSPDT VLQGRGGFRL  300
HRVETDNEPG RCRRTDGKKW RCSKVALSGQ KYCDKHMHRG IKKKHRVDTT NSHDNAGFTP  360
LTVKTAARSL SCKDGDDQKL SVSVLGIPLP RVSDEKSTSS CSTDTTITDT ALRGEEDNEE  420
VLSLCSSGV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	123	GRKRSRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10001460m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397730.1	0.0	growth-regulating factor 9 isoform X1
Swissprot	Q8S9M3	0.0	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	V4LHD7	0.0	V4LHD7_EUTSA; Uncharacterized protein
STRING	XP_006397730.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	0.0	growth-regulating factor 9

Link Out ? help Back to Top
Phytozome	Thhalv10001460m
Entrez Gene	18015441

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]