PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10001365m | ||||||||
Common Name | EUTSA_v10001365mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARF | ||||||||
Protein Properties | Length: 599aa MW: 67078.3 Da PI: 6.7889 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.7e-23 | 124 | 224 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +k+a+e+ + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + ++ Thhalv10001365m 124 FVKILTASDTSTHGGFSVLRKHATEClpsldMRQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLR--GQT 215 89****************************9666777789************************************************3..378 PP E..EEEEE- CS B3 90 felvvkvfr 98 + l+v+v+r Thhalv10001365m 216 GDLRVGVRR 224 888**9998 PP | |||||||
2 | Auxin_resp | 96.4 | 4.3e-32 | 250 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk+ F v+Y+Pr s+F++ v+k+++a+k+ + +GmRf+m+fe+e+s+er ++Gt+vg+ dl++ +Wp SkWrsL+ Thhalv10001365m 250 ASHAVNTKTLFVVFYKPRI--SQFIIGVNKYMAAMKIGFPIGMRFRMRFEGEESPERIFTGTIVGTGDLSS-QWPASKWRSLQ 329 789***************8..9**********************************************777.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.19E-40 | 109 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-37 | 118 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.11E-20 | 123 | 224 | No hit | No description |
SMART | SM01019 | 2.5E-21 | 124 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-21 | 124 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-29 | 250 | 329 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.7E-6 | 473 | 523 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.31E-13 | 484 | 563 | No hit | No description |
PROSITE profile | PS51745 | 27.02 | 487 | 579 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.6E-6 | 533 | 572 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MANVDVDFRR SGSYDDQLYM ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVALTNQGVV 60 DQEIPDFNLP PKILCRVLSV MLKAEHETDE VYAQITLQPE EDQSEPTSLD PPLVEPAKQS 120 VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMRQPTP TQELVARDLH GYEWRFKHIF 180 RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF LRGQTGDLRV GVRRLARQQS TMPASVISSQ 240 SMHLGVLATA SHAVNTKTLF VVFYKPRISQ FIIGVNKYMA AMKIGFPIGM RFRMRFEGEE 300 SPERIFTGTI VGTGDLSSQW PASKWRSLQI QWDEPSTVQR PNKVSTWEIE PFSPSVLTPT 360 PTQPQSKSKR SRPINSSSVS EITGSPIAST FLSLDSNSSL RLLFQDPSTE RNSNKPVFPS 420 GLQCKKTETP VTSCCRLFGF DLMSKPASTA PVPPDKLLIS VDSNNSGSAK CQDPNSLTEQ 480 KQQTSTRSRT KVQKQGTAVG RAVDLTLLRS YDELINELEK MFEIDGELSP KDKWAIVFTD 540 DEGDMMLVGD DPWNEFCKMA KKLFIYSTDE VKKMSTKSSL DDEGTIVNLE LDQRTVYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-163 | 12 | 353 | 13 | 356 | Auxin response factor 1 |
4ldw_A | 1e-163 | 12 | 353 | 13 | 356 | Auxin response factor 1 |
4ldw_B | 1e-163 | 12 | 353 | 13 | 356 | Auxin response factor 1 |
4ldx_A | 1e-164 | 12 | 353 | 13 | 356 | Auxin response factor 1 |
4ldx_B | 1e-164 | 12 | 353 | 13 | 356 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10001365m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353363 | 0.0 | AK353363.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-L13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006397845.1 | 0.0 | auxin response factor 11 isoform X2 | ||||
Swissprot | Q9ZPY6 | 0.0 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | V4LHN4 | 0.0 | V4LHN4_EUTSA; Auxin response factor | ||||
STRING | XP_006397845.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.1 | 0.0 | auxin response factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10001365m |
Entrez Gene | 18015527 |
Publications ? help Back to Top | |||
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