PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10001299m

Common Name

EUTSA_v10001299mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 931aa MW: 102495 Da PI: 5.3582

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10001299m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.4e-29	594	644	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI RWP+Rki+++ Thhalv10001299m 594 EKNVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGITRWPSRKINKV 644 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.893	583	664	IPR003035	RWP-RK domain
Pfam	PF02042	5.4E-27	596	644	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-22	824	919	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.3E-23	832	913	No hit	No description
SMART	SM00666	6.6E-25	834	916	IPR000270	PB1 domain
PROSITE profile	PS51745	20.517	834	916	IPR000270	PB1 domain
Pfam	PF00564	3.9E-17	835	915	IPR000270	PB1 domain
CDD	cd06407	1.98E-37	835	915	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MENPFASRDK WFGYPDFPTE QTDGSSFGSG VRNLISDDML NSSSSDLMNF DSFATWCNSP 60 SASESLFAQY GLSTSQPMPF GAVTLLHAAE PKPATFSGLS RSFHDLESSY YGEERSSLQE 120 LSSQFHLSLD SDELGGKRRR VTNQKSGFPN VLSCTIPRSL SHSLDEKMLK ALSLFIESSG 180 SGEGILAQVW TPIKTGDQYL LSTCDQAYLL DPRLSQYREV SRKFTFASEA NQCSYPGLPG 240 RVFISGVPEW TSNVIYYKTE EYLRMKHAID NEVRGSIAIP ILEASGTSCC AVMELVTFKE 300 KPNFDMEMDS VCRALQAVNL RTSAIPRPQY LSINQRDALA EIQDVLRAVC HAHKLPLALA 360 WIPCSYAKGG KDPSVSVCGP NSVENCVLCI EETACYVNDM EMEGFVHACL EHCLREKEGI 420 VGKAFVSNQP FFSSDVKAYD ISEYPLVQHA RKYGLNAAVA IKLRSIYTGE DDYILELFLP 480 PNMKGSLEQQ LLLDSLSGTM QRICRTLRTV SDVRATKKEV IRAGFRSDEM SNFPQTTCSG 540 NFQTIVLDSE LNSTRSIFSD MSSDKENGST GSQGTFEQDM SKARTPEKKK STTEKNVSLS 600 VLQQHFSGSL KDAAKSLGVC PTTLKRICRQ HGITRWPSRK INKVNRSLKK IQTVLDSVQG 660 VEGGLKFDSA TGEFITVGPF IKESDTHKGL SSNGNNAHVR GQEAEDTSFE LLKAKSVDNA 720 NKLEEDFLTN GSFMEANANG QQWGWVAGQS GFNESEGIKN NGNSSSQAIA DGMDTTTIRC 780 SDNIIEPNRS MSCSMSNSSN GSGAVMLGSS STSMDDWNQM RTQKSNSGES GSTTLTVKAT 840 YKEDTIRFKF EPSVGCPQLY KEVGKRYKLQ DGSFQLKYLD DEEEWVMLVT DSDLQECLEI 900 LYGMGKHTAK FLVRDLPAPI GSSAASNGYL *

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MENPFASRDK WFGYPDFPTE QTDGSSFGSG VRNLISDDML NSSSSDLMNF DSFATWCNSP  60
SASESLFAQY GLSTSQPMPF GAVTLLHAAE PKPATFSGLS RSFHDLESSY YGEERSSLQE  120
LSSQFHLSLD SDELGGKRRR VTNQKSGFPN VLSCTIPRSL SHSLDEKMLK ALSLFIESSG  180
SGEGILAQVW TPIKTGDQYL LSTCDQAYLL DPRLSQYREV SRKFTFASEA NQCSYPGLPG  240
RVFISGVPEW TSNVIYYKTE EYLRMKHAID NEVRGSIAIP ILEASGTSCC AVMELVTFKE  300
KPNFDMEMDS VCRALQAVNL RTSAIPRPQY LSINQRDALA EIQDVLRAVC HAHKLPLALA  360
WIPCSYAKGG KDPSVSVCGP NSVENCVLCI EETACYVNDM EMEGFVHACL EHCLREKEGI  420
VGKAFVSNQP FFSSDVKAYD ISEYPLVQHA RKYGLNAAVA IKLRSIYTGE DDYILELFLP  480
PNMKGSLEQQ LLLDSLSGTM QRICRTLRTV SDVRATKKEV IRAGFRSDEM SNFPQTTCSG  540
NFQTIVLDSE LNSTRSIFSD MSSDKENGST GSQGTFEQDM SKARTPEKKK STTEKNVSLS  600
VLQQHFSGSL KDAAKSLGVC PTTLKRICRQ HGITRWPSRK INKVNRSLKK IQTVLDSVQG  660
VEGGLKFDSA TGEFITVGPF IKESDTHKGL SSNGNNAHVR GQEAEDTSFE LLKAKSVDNA  720
NKLEEDFLTN GSFMEANANG QQWGWVAGQS GFNESEGIKN NGNSSSQAIA DGMDTTTIRC  780
SDNIIEPNRS MSCSMSNSSN GSGAVMLGSS STSMDDWNQM RTQKSNSGES GSTTLTVKAT  840
YKEDTIRFKF EPSVGCPQLY KEVGKRYKLQ DGSFQLKYLD DEEEWVMLVT DSDLQECLEI  900
LYGMGKHTAK FLVRDLPAPI GSSAASNGYL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	140	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10001299m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	0.0	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397520.1	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	V4LGT8	0.0	V4LGT8_EUTSA; Uncharacterized protein
STRING	XP_006397520.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10001299m
Entrez Gene	18015478

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]