PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10001297m | ||||||||
Common Name | EUTSA_v10001295mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 932aa MW: 103870 Da PI: 5.8017 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.3 | 1.9e-42 | 144 | 221 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Thhalv10001297m 144 ACQVENCEADLSKVKDYHRRHKVCEMHSKATSAIVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 221 5**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-34 | 138 | 206 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.633 | 142 | 219 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-39 | 144 | 223 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.3E-31 | 145 | 218 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 3.58E-8 | 721 | 822 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 7.0E-8 | 723 | 820 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.46E-9 | 723 | 819 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 932 aa Download sequence Send to blast |
MEARIEGEAQ HLYGLRAMDL RSVGKRSVEW DLNDWKWDGD LFVATQLNPG GGETMGRQFF 60 PIGNSSNSSS SCSDEGNNTE LTVTRPREVE KKRRAVATGE DNNGGGGGGL TLKLGDDGYD 120 LNGEREGGSA AKKTKFGGGT NRAACQVENC EADLSKVKDY HRRHKVCEMH SKATSAIVGG 180 IMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PEPGANGNPL SDDHQSSNFL 240 LISLLKILSN MHYHPGDQDL MSHLLKSLVS HAGEQLGKNL VELLLQGGSQ ASLNIGNSNL 300 LAIEQAPQED LKQAPEIPRQ ELYANGTATE NRSEKQVKVN DFDLNDIYID SDDGTDIERS 360 PPPTNPATSS LDYPSWIHQS SPPQTSRNSD SASDQSPSSS SEDAQMRTGR IVFKLFGKEP 420 NDFPVVLRGQ ILDWLSHSPT DMESYIRPGC IVLTIYLRQA ETAWEDLSDD LGFSLRKLLD 480 LSDDPLWTTG WIYVRVQNQL AFVFDGQVVV DTSLPLRSRD YSHIMSVRPL AVATTGKAQF 540 TVKGINLRRP GTRLLCAVEG KYLIQETKHD STKENDDCNE NNEIVECVSF SCDLPITSGR 600 GFMEIEDQGL SSSFFPFIVV EEDDVCSEIR ILETTLEFTE TDSAKQAMDF IHEIGWLLHR 660 SKLGESDPNP DVFPLERFKW LIEFSMDREW CAVIRKLLNM FFEGAVGDSS SSSDAALSEL 720 CLLHRAVRKN SKPMVEMLLR YVPKQQRHSL FRPDATGPAG LTPLHIAAGK DCSEDVLDAL 780 TEDPAMVGIK AWKTSRDSTG FTPEDYARLR GHFSYIHLIQ RKINKKSTTE DHVVVNIPVS 840 FSDREMKESK SGPVASALEI TTQTNQLQCK LCDHKLVYGT ARRSVAYRPA MLSMVAIAAV 900 CVCVALLFKS CPEVLYVFQP FRWELLDYGT R* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-32 | 145 | 218 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00603 | PBM | Transfer from AT2G47070 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10001297m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC815948 | 0.0 | KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006397898.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | V4KN69 | 0.0 | V4KN69_EUTSA; Uncharacterized protein | ||||
STRING | XP_006397898.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10001297m |
Entrez Gene | 18015720 |
Publications ? help Back to Top | |||
---|---|---|---|
|