PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10001003m | ||||||||
Common Name | EUTSA_v10001003mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 27633.8 Da PI: 5.4993 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.7e-20 | 140 | 190 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Thhalv10001003m 140 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 190 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.04E-32 | 139 | 198 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 139 | 198 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-23 | 140 | 200 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.276 | 140 | 198 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-14 | 140 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-41 | 140 | 204 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 164 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MYGQGEIMAA AESDYALLES IRRHLLGGEN EFRLSESIPS SCFTESWGDL PLKENDSEDM 60 LVYGVLKDAF DGTFDTSSPS SDLSCLSDFL DLEPSSSKRQ TNPSLNDFPA VKLELSENLA 120 AVAEKPKLAV SAAPPAKGKH YRGVRQRPWG KFAAEIRDPA KNGARVWLGT FETAEDAALA 180 YDRAAFRMRG SRALLNFPLR VNSGEPDPVR ITSKRSYASS SSSSSSSENG QTKRRRKTEN 240 LPSELQVKCE VA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-45 | 136 | 205 | 1 | 70 | ATERF1 |
3gcc_A | 4e-45 | 136 | 205 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00548 | DAP | Transfer from AT5G47220 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10001003m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398419.1 | 0.0 | ethylene-responsive transcription factor 2 | ||||
Swissprot | O80338 | 1e-113 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | V4LBV4 | 0.0 | V4LBV4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398419.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47220.1 | 9e-99 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10001003m |
Entrez Gene | 18016340 |
Publications ? help Back to Top | |||
---|---|---|---|
|