PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000950m
Common NameEUTSA_v10000950mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 346aa    MW: 39670.1 Da    PI: 6.2
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000950mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.97.9e-34141052102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++ ++++sws+n++sf+v+++ +f++++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+  l++
  Thhalv10000950m  14 FLTKTYEMVDDSSSDSIVSWSDNNKSFIVKNPADFSRDLLPRFFKHKNFSSFIRQLNTYGFRKIDPEK---------WEFANDDFVRGQPYLMK 98 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Thhalv10000950m  99 NIHRRKP 105
                      ****985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.85E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDENSGGSSS LPPFLTKTYE MVDDSSSDSI VSWSDNNKSF IVKNPADFSR DLLPRFFKHK  60
NFSSFIRQLN TYGFRKIDPE KWEFANDDFV RGQPYLMKNI HRRKPVHSHS LQNLQAQNPL  120
TESERQSMKD QIERLRKENE VLLADLQNQE QERKVFELQV ATLKERLQNM EHRQKSIVSY  180
VSQVLEKPGL SLNLETHERR KRKSQETTSL LPPSRSNAEQ VEKLESSLTF LENLVTESCD  240
KSGVHSSSMD LDVNESTSCG ETRPKSTKID MNSEPVTVAA PKTGVNDVFW EQCLTENPGS  300
IEQQEVQSER RDVEARNGGN KIGDGRTFWW NSRNVNNNIT ERALI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-23110316129Heat shock factor protein 1
5d5v_B7e-23110316129Heat shock factor protein 1
5d5v_D7e-23110316129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000950m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535290.0AK353529.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-49-I17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398255.10.0heat stress transcription factor A-4c
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLE4MYD20.0E4MYD2_EUTHA; mRNA, clone: RTFL01-49-I17
TrEMBLV4LIU80.0V4LIU8_EUTSA; Uncharacterized protein
STRINGXP_006398255.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]