PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000931m | ||||||||
Common Name | EUTSA_v10000931mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 41831.1 Da PI: 4.7165 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.3e-21 | 220 | 270 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAa+a+++a+ +l+g Thhalv10000931m 220 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 270 8********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.06E-32 | 219 | 278 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-33 | 219 | 279 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.368 | 220 | 278 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 220 | 280 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-37 | 220 | 284 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-15 | 220 | 270 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 221 | 232 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 244 | 260 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MVKPHINCFF LFSIYTLFST LFSTQIILHQ LKSSSLFFLC FLWSHEFDLK IQNFKMATPS 60 EVSALWFIEK HLLDEVSPVA EDPWMVNDSA ATESSSDSSS MIFVSSSAPD FASLPPIDFY 120 ESEKKPEIID LSTPRFMDFI QLEFDSEIFD SDFDLKPFDQ NENQFESETK PQIPSASDDS 180 QSNRKPPLKI SLPTKTEWIQ FAGGNQQPEV TKPISEEKKH YRGVRQRPWG KFAAEIRDPN 240 KRGSRIWLGT FDTAIEAARA YDEAAFRLRG SKAILNFPLE VGKWKKPRSD ADGDKKRKRD 300 ENDGEDVTVV EKVLKTEQSV NGGETFPFGT SNLTEIFDWD LTAFLNFPLL SPLSPHPSFG 360 YSQLTVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-31 | 219 | 281 | 4 | 66 | ATERF1 |
3gcc_A | 2e-31 | 219 | 281 | 4 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 297 | KKPRSDADGDKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000931m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183493 | 1e-140 | AC183493.1 Brassica oleracea Contig B, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398420.2 | 0.0 | ethylene-responsive transcription factor 5 | ||||
Swissprot | O80341 | 1e-150 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | V4LJ86 | 0.0 | V4LJ86_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398420.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-115 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000931m |
Entrez Gene | 18016341 |
Publications ? help Back to Top | |||
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