PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000931m
Common NameEUTSA_v10000931mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 368aa    MW: 41831.1 Da    PI: 4.7165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000931mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-21220270255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  Thhalv10000931m 220 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 270
                      8********.**********96655..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-32219278No hitNo description
Gene3DG3DSA:3.30.730.104.5E-33219279IPR001471AP2/ERF domain
PROSITE profilePS5103224.368220278IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23220280IPR016177DNA-binding domain
SMARTSM003801.8E-37220284IPR001471AP2/ERF domain
PfamPF008479.3E-15220270IPR001471AP2/ERF domain
PRINTSPR003671.6E-10221232IPR001471AP2/ERF domain
PRINTSPR003671.6E-10244260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVKPHINCFF LFSIYTLFST LFSTQIILHQ LKSSSLFFLC FLWSHEFDLK IQNFKMATPS  60
EVSALWFIEK HLLDEVSPVA EDPWMVNDSA ATESSSDSSS MIFVSSSAPD FASLPPIDFY  120
ESEKKPEIID LSTPRFMDFI QLEFDSEIFD SDFDLKPFDQ NENQFESETK PQIPSASDDS  180
QSNRKPPLKI SLPTKTEWIQ FAGGNQQPEV TKPISEEKKH YRGVRQRPWG KFAAEIRDPN  240
KRGSRIWLGT FDTAIEAARA YDEAAFRLRG SKAILNFPLE VGKWKKPRSD ADGDKKRKRD  300
ENDGEDVTVV EKVLKTEQSV NGGETFPFGT SNLTEIFDWD LTAFLNFPLL SPLSPHPSFG  360
YSQLTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31219281466ATERF1
3gcc_A2e-31219281466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284297KKPRSDADGDKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000931m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834931e-140AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398420.20.0ethylene-responsive transcription factor 5
SwissprotO803411e-150EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLV4LJ860.0V4LJ86_EUTSA; Uncharacterized protein
STRINGXP_006398420.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-115ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]