PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000907m
Common NameEUTSA_v10000907mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 401aa    MW: 45114.8 Da    PI: 7.5526
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000907mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.21.4e-25300381185
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                      rW+++ev+aLi+ r+++ee+ +    k+ lW+e+s++m+erg++rs+k+Ckekwen+nk+yk++  g kk+ +e+s+t +yf++l
  Thhalv10000907m 300 RWPHEEVHALIASRSQVEEKTKIH--KGVLWDEISAQMKERGYQRSAKKCKEKWENMNKYYKRVMGGGKKQ-PEHSKTRSYFEKL 381
                      8*******************9998..9****************************************9995.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.88E-5299384IPR009057Homeodomain-like
PfamPF138376.1E-19299381No hitNo description
CDDcd122032.62E-23299361No hitNo description
Gene3DG3DSA:1.10.10.605.7E-4299355IPR009057Homeodomain-like
PROSITE profilePS500907.004300355IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MELLAGDCRK RVGDDFADDV DPFDGSDGGG CHWMYGTGQS GSLRAQGNDD ALATLADLAS  60
PPQKLKPIRC GVLKPPSEDR HPLDILAGTL DRLPEMGFLG DGCFEAPLGS KIADVEESGQ  120
LTRGFAKDDV EMEFQGRVSR HRTSWDGVSL SSSLDSDDSD SSPGVRKALT GKRKRKTREK  180
LEHFLDKLVG SMMKRQEKMH NQLIRVMEKM EGERIRREDA WRQQEIERMK QSEEARKQEM  240
SRSLSLISFI KSVMGEEIEI PSASDPLPQP QNLPAQCKDE KCESAQTKGE AKFVYSSGRR  300
WPHEEVHALI ASRSQVEEKT KIHKGVLWDE ISAQMKERGY QRSAKKCKEK WENMNKYYKR  360
VMGGGKKQPE HSKTRSYFEK LGNLYKTNSG SADHSGEKDE *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000907m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398465.10.0trihelix transcription factor GTL1
RefseqXP_024010989.10.0trihelix transcription factor GTL1
TrEMBLV4LJC40.0V4LJC4_EUTSA; Uncharacterized protein
STRINGXP_006398465.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-175Trihelix family protein